Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_O21
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 211 1e-55
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 206 3e-54
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.39
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 30 0.39
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 27 3.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 4.9
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 6.4
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 8.5
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 8.5
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 211 bits (515), Expect = 1e-55
Identities = 112/212 (52%), Positives = 132/212 (62%)
Frame = +1
Query: 97 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 276
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 277 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 456
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 457 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 636
LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHVDM ++LA N
Sbjct: 122 LLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAAN 181
Query: 637 VHLSINXLVSLAPKTLAXCPIIGXXKSPMGPP 732
+ L+IN LVSL K + KS MG P
Sbjct: 182 LSLAINFLVSLLKKGWQNIGSL-VIKSTMGKP 212
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 206 bits (503), Expect = 3e-54
Identities = 109/212 (51%), Positives = 133/212 (62%)
Frame = +1
Query: 97 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 276
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 277 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 456
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 457 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 636
LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++L N
Sbjct: 122 LLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIAN 181
Query: 637 VHLSINXLVSLAPKTLAXCPIIGXXKSPMGPP 732
+ L++N LVSL K + KS MG P
Sbjct: 182 IMLAVNFLVSLLKKGWQNIGSL-VVKSTMGKP 212
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.39
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 79 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 243
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 30.3 bits (65), Expect = 0.39
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +1
Query: 430 ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVAV 597
+ +I +PR+LG + K P + E + +++ G F +
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203
Query: 598 GHVDMTPDELAQNVHLSINXLVS 666
GHV T ELA+NV SI VS
Sbjct: 204 GHVSNTSTELAENVE-SILQFVS 225
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 623 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 525
S+G ++ T T R F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +3
Query: 564 NEEGVVSFCSSWPCGHDS**ACSECASFHQLXCV 665
NE C W C D C++C ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 6.4
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -1
Query: 319 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 140
P H A LQE A AA+ L+ ++NA G +S D +AL P S +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373
Query: 139 RHSRTRRACH 110
HS+++ + H
Sbjct: 374 SHSQSQNSLH 383
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 543 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 436
D L RH L + + F + Q GT+ NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 636 ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 472
+L K++ + ++C+++ +HL+H+ L F N L+ L+ F FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,983
Number of Sequences: 5004
Number of extensions: 61970
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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