Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O21
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   1.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.2  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   3.8  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.8  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   3.8  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   3.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 85  LSENHLSQRLASCQNLK 35
           L E HL+QR+ SC  LK
Sbjct: 121 LKEKHLTQRINSCDLLK 137


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 426 IRVTDQADSPFVGSRFEQSW*IPWSSLPP 512
           ++ TD+ D+ + G+RF   + IP   LPP
Sbjct: 423 VQETDKYDA-YYGNRFSGEYEIPAHGLPP 450


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 472 LNKAGKFPGLLSHQE 516
           LNK GK P L++H+E
Sbjct: 573 LNKIGKNPNLVAHRE 587


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 472 LNKAGKFPGLLSHQE 516
           LNK GK P L++H+E
Sbjct: 541 LNKIGKNPNLVAHRE 555


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 79 ENHLSQRLASCQNLK 35
          E HL+QR+ SC  LK
Sbjct: 2  EKHLTQRINSCDLLK 16


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 79 ENHLSQRLASCQNLK 35
          E HL+QR+ SC  LK
Sbjct: 2  EKHLTQRINSCDLLK 16


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 598 GHVDMTPDELAQNVHLSINXLVSLA 672
           G  ++TPD+  ++VH  I   VS A
Sbjct: 79  GTRELTPDDFTEDVHEIIEQCVSKA 103


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 598 GHVDMTPDELAQNVHLSINXLVSLA 672
           G  ++TPD+  ++VH  I   VS A
Sbjct: 79  GTRELTPDDFTEDVHEIIEQCVSKA 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,953
Number of Sequences: 438
Number of extensions: 4157
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)