Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O18
         (1035 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    38   0.003
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    31   0.35 
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    29   1.4  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    28   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.7  

>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +1

Query: 232 ELXIDNVVKKLLTVRGEKPGMNVQLTEIDXXGLCLKS 342
           ++ +D+++ +LL VRG +PG  VQL+E +   LC K+
Sbjct: 5   DVDLDSIIDRLLEVRGSRPGRQVQLSEDEIRFLCNKA 41



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 405 GDVHGQYYDL 434
           GD+HGQYYDL
Sbjct: 62  GDIHGQYYDL 71


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 241 IDNVVKKLLTVRGEKPGMNVQLTEIDXXGLCLKSXRXIL 357
           ID +++KL+  R  KP   VQL++ +   LC  S    L
Sbjct: 5   IDAIIEKLVKARNGKPSKQVQLSDAEIRYLCTTSRSIFL 43


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 405 GDVHGQYYDLFXGLFRV 455
           GD+HGQ+YDL   LFRV
Sbjct: 50  GDIHGQFYDLLE-LFRV 65


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 405 GDVHGQYYDLFXGLFRV 455
           GD+HGQYYDL   LF V
Sbjct: 118 GDIHGQYYDLMK-LFEV 133


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 860 PPXPXPQLGXXXPQXXPXXPPP 925
           PP P P  G   P   P  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,501
Number of Sequences: 5004
Number of extensions: 33963
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)