Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O16
         (921 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    99   4e-21
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    99   4e-21
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    28   8.2  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    28   8.2  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 44/82 (53%), Positives = 56/82 (68%)
 Frame = +1

Query: 166 ITVQKVQGKGTLPRVRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVA 345
           +T  K   +    + RRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ 
Sbjct: 24  VTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLP 83

Query: 346 LKRCKHFELGGDKKRKGQMIQF 411
           +KRCKHFELGG KK +GQ+IQF
Sbjct: 84  IKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 44/82 (53%), Positives = 56/82 (68%)
 Frame = +1

Query: 166 ITVQKVQGKGTLPRVRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVA 345
           +T  K   +    + RRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ 
Sbjct: 24  VTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLP 83

Query: 346 LKRCKHFELGGDKKRKGQMIQF 411
           +KRCKHFELGG KK +GQ+IQF
Sbjct: 84  IKRCKHFELGGQKKSRGQVIQF 105


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 295 IVLRLECADCKVRSQVALKRCKHF----ELGGDKKRKGQMIQFK 414
           I+ R EC++  +R +V L  C+      E+ GDK+RK  + Q+K
Sbjct: 764 IIGRPECSEKTLRLEVNLSTCEGTLETAEMIGDKRRKTTLFQWK 807


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 295 IVLRLECADCKVRSQVALKRCKHF----ELGGDKKRKGQMIQFK 414
           I+ R EC++  +R +V L  C+      E+ GDK+RK  + Q+K
Sbjct: 764 IIGRPECSEKTLRLEVNLSTCEGTLETAEMIGDKRRKTTLFQWK 807


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,568,221
Number of Sequences: 27780
Number of extensions: 231893
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)