Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_O13
(945 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 28 2.2
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 28 2.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 28 2.2
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 27 5.1
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 26 6.7
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 26 6.7
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 26 8.9
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 26 8.9
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 8.9
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 26 8.9
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 27.9 bits (59), Expect = 2.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 672 KNIFLHDLIIGWSSTHXNY 616
K+++ H+ +IGW +H NY
Sbjct: 105 KSVYRHENVIGWYHSHPNY 123
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 678 YRKNIFLHDLIIGWSSTHXNYEHRSKY 598
++KN FL D+++ WS+ N+ + +Y
Sbjct: 254 FQKNAFLLDVLLKWSALTVNWNRKHEY 280
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 336 KVQRWTRSD*TWSRLWRSI 392
K Q W RS WS++WR I
Sbjct: 639 KDQEWRRSKREWSKIWRQI 657
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 304 FRAHRLRRDQNKTNLYIK-GFRKPN*NSPFFLIITI 200
F +HR +R+ NK IK G R PN PF L +I
Sbjct: 66 FTSHRKKRE-NKIKKEIKRGIRDPNSEDPFELFCSI 100
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 460 IPVLFSVLLTIPSIMGVLYLLAFQVVVLRIE-CIWCTLXLCLQVLEFIFASM 612
+P+ V L + ++ +++ F V+ LR+ I L + + VL I A++
Sbjct: 146 VPIAIYVCLLVLMLLSLIFFAEFAVLALRVTGVIIAVLGMIIAVLGMIIAAL 197
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 460 IPVLFSVLLTIPSIMGVLYLLAFQVVVLRIE-CIWCTLXLCLQVLEFIFASM 612
+P+ V L + ++ +++ F V+ LR+ I L + + VL I A++
Sbjct: 146 VPIAIYVCLLVLMLLSLIFFAEFAVLALRVTGVIIAVLGMIIAVLGMIIAAL 197
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 602 NINSKTCKHSXRVHQIHSIRSTTTWKASRYNT 507
++ S CK S V + +S +TWKA T
Sbjct: 270 DLESDACKFSHSVVDFSNYKSYSTWKARELQT 301
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 234 FGLRNPFIYKFVLFWSLRNL 293
F RNPFI++FV SLRNL
Sbjct: 322 FAERNPFIFRFVK--SLRNL 339
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 8.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 488 QFHRSWGYCIYWPSKWWCSV 547
QF GY +YW + +CS+
Sbjct: 307 QFPTKTGYLVYWDPELYCSI 326
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 407 TTNNPNRTP*SRPSLVGSCPTLYFSII 327
TTN+P R+P RPSL P + ++
Sbjct: 39 TTNDPERSPSERPSLKIDIPANRYDML 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,196
Number of Sequences: 5004
Number of extensions: 56930
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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