Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O13
         (945 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.00 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   2.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 1.00
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 596  NSKTCKHSXRVHQIHSIRSTTTWKASRY 513
            N  TC    R   I SIRS +TW   R+
Sbjct: 1660 NYNTCDRIKRGTVIRSIRSHSTWDPRRH 1687


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 337 KYNVGQDPTKLGRDYGVLFGLFVV 408
           +Y+ G DP  LG     + GLFV+
Sbjct: 208 RYDNGIDPLPLGCPVNAIMGLFVL 231


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 537 HHLEGQ*IQYPHDRWNCQ*Y*EQYWYIFFAKTAFAPQQ*PQ 415
           H + G  + + HD  N        W I FAKT   PQ  P+
Sbjct: 477 HEVVGSSLLFVHDTKNAG-----IWMIDFAKTLPLPQHLPR 512


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 537 HHLEGQ*IQYPHDRWNCQ*Y*EQYWYIFFAKTAFAPQQ*PQ 415
           H + G  + + HD  N        W I FAKT   PQ  P+
Sbjct: 392 HEVVGSSLLFVHDTKNAG-----IWMIDFAKTLPLPQHLPR 427


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 537 HHLEGQ*IQYPHDRWNCQ*Y*EQYWYIFFAKTAFAPQQ*PQ 415
           H + G  + + HD  N        W I FAKT   PQ  P+
Sbjct: 711 HEVVGSSLLFVHDTKNAG-----IWMIDFAKTLPLPQHLPR 746


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/40 (20%), Positives = 17/40 (42%)
 Frame = +1

Query: 256 YINSFYFGLFATCELGTLILKSVLIIEKYNVGQDPTKLGR 375
           ++  FY  +  TC   ++     + I++Y     P K  +
Sbjct: 257 FVCDFYIAMDVTCSTSSIFNLVAISIDRYIAVTQPIKYAK 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,180
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)