Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O10
         (1011 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.79 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.79 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   7.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +2

Query: 863  AXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPPXXXA 1009
            A P P   G P  P      PP         P   P    PP PP   A
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA 1197



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 22/84 (26%), Positives = 23/84 (27%)
 Frame = +2

Query: 743  PXPTQXXXPXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXXPHXXXXP 922
            P P     P  PK        P      S    +     GA P P   G P  P      
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAA 1101

Query: 923  PPXXPKXXRXKPXXHPXPXXPPXP 994
            PP  PK     P        PP P
Sbjct: 1102 PP-VPKPSVAVPPVPAPSGAPPVP 1124


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 15/47 (31%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
 Frame = +2

Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKP-XXHPXPXXPPXP 994
           P   P P  PG P  P+     PP  P      P    P P  P  P
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVP 546


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = +2

Query: 848  SXXPGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPPXXXA 1009
            S  P A P       P  P      PP  P      P     P  PP PP   A
Sbjct: 422  SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 110 LPPCTESSTLFTIPPTTPIH 51
           +PP T  +T  T+PPTT ++
Sbjct: 84  VPPTTSMNTTTTVPPTTSLN 103


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +2

Query: 839  GAXSXXPGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
            G     P + P P  P     P      PP  P      P   P P  PP  P
Sbjct: 1680 GMAPAHPVSTP-PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,871
Number of Sequences: 5004
Number of extensions: 19155
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)