Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_O10
(1011 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 37 0.026
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 37 0.026
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 35 0.11
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 35 0.11
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 35 0.11
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 34 0.19
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 34 0.19
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 34 0.19
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 34 0.19
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 34 0.19
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 34 0.19
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.32
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 33 0.32
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.32
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 33 0.32
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.43
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.43
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 32 0.56
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 31 0.99
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.3
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 1.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.3
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.7
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 30 2.3
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 30 2.3
Z72502-7|CAA96592.1| 140|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 30 3.0
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 3.0
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 30 3.0
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 30 3.0
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 4.0
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 4.0
AF022983-5|AAK82915.1| 79|Caenorhabditis elegans Hypothetical ... 29 4.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 7.0
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 29 7.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 7.0
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 7.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 7.0
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 7.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 7.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 7.0
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 28 9.2
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 36.7 bits (81), Expect = 0.026
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +3
Query: 864 PPXPXXPXGXLXXPTXXPXPHXPNXNXXAXNPHXIPXPXXPPXP 995
PP P G P P PN PH +P P PP P
Sbjct: 574 PPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPP 617
Score = 35.5 bits (78), Expect = 0.061
Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Frame = +2
Query: 767 PXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXX----PHXXXXPPPXX 934
P P + + PSR + +G P A P P P P P PPP
Sbjct: 575 PPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPP 634
Query: 935 PKXXRXKPXXHPXPXXPPXPP 997
P P PP PP
Sbjct: 635 PPPPMGLPAVGAGAPPPPPPP 655
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Frame = +2
Query: 767 PXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXP--GXPXX-PHXXXXPPPXXP 937
P P + P+R G P + P P P G P PH PPP P
Sbjct: 558 PPPPTRVESHGLAPARPPPPPPSSGTRGIAP-SRPLPQAPNYGTPENRPHAVPPPPPPPP 616
Query: 938 -KXXRXKPXXHPXPXXPPXPP 997
+ P P PP PP
Sbjct: 617 PQSFGMAPISSAAPPPPPPPP 637
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 36.7 bits (81), Expect = 0.026
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +3
Query: 864 PPXPXXPXGXLXXPTXXPXPHXPNXNXXAXNPHXIPXPXXPPXP 995
PP P G P P PN PH +P P PP P
Sbjct: 400 PPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPP 443
Score = 35.5 bits (78), Expect = 0.061
Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Frame = +2
Query: 767 PXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXX----PHXXXXPPPXX 934
P P + + PSR + +G P A P P P P P PPP
Sbjct: 401 PPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPP 460
Query: 935 PKXXRXKPXXHPXPXXPPXPP 997
P P PP PP
Sbjct: 461 PPPPMGLPAVGAGAPPPPPPP 481
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Frame = +2
Query: 767 PXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXP--GXPXX-PHXXXXPPPXXP 937
P P + P+R G P + P P P G P PH PPP P
Sbjct: 384 PPPPTRVESHGLAPARPPPPPPSSGTRGIAP-SRPLPQAPNYGTPENRPHAVPPPPPPPP 442
Query: 938 -KXXRXKPXXHPXPXXPPXPP 997
+ P P PP PP
Sbjct: 443 PQSFGMAPISSAAPPPPPPPP 463
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 34.7 bits (76), Expect = 0.11
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = +2
Query: 860 GAXPXPXXPGXPXXPHXXXXP--PPXXPKXXRXKPXXHPXPXXPPXPP 997
GA P PG P P P PP P P P P PP PP
Sbjct: 111 GAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPP 158
Score = 29.1 bits (62), Expect = 5.3
Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +2
Query: 803 GPSRXTGXSXXHGAXSXXPGAXPXPXXPG-XPXXPHXXXXPPPXXPKXXRXKPXXHPXPX 979
GP G G PGA P PG P P PPP P P P P
Sbjct: 105 GPPGPAGAPGKPGKPGR-PGAPGTPGTPGKPPVAPCEPTTPPPCKP-----CPQGPPGPP 158
Query: 980 XPPXPP 997
PP P
Sbjct: 159 GPPGAP 164
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 34.7 bits (76), Expect = 0.11
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = +2
Query: 860 GAXPXPXXPGXPXXPHXXXXP--PPXXPKXXRXKPXXHPXPXXPPXPP 997
GA P PG P P P PP P P P P PP PP
Sbjct: 106 GAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPP 153
Score = 29.1 bits (62), Expect = 5.3
Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +2
Query: 803 GPSRXTGXSXXHGAXSXXPGAXPXPXXPG-XPXXPHXXXXPPPXXPKXXRXKPXXHPXPX 979
GP G G PGA P PG P P PPP P P P P
Sbjct: 100 GPPGPAGAPGKPGKPGR-PGAPGTPGTPGKPPVAPCEPTTPPPCKP-----CPQGPPGPP 153
Query: 980 XPPXPP 997
PP P
Sbjct: 154 GPPGAP 159
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 34.7 bits (76), Expect = 0.11
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = +2
Query: 860 GAXPXPXXPGXPXXPHXXXXP--PPXXPKXXRXKPXXHPXPXXPPXPP 997
GA P PG P P P PP P P P P PP PP
Sbjct: 106 GAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPP 153
Score = 29.1 bits (62), Expect = 5.3
Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +2
Query: 803 GPSRXTGXSXXHGAXSXXPGAXPXPXXPG-XPXXPHXXXXPPPXXPKXXRXKPXXHPXPX 979
GP G G PGA P PG P P PPP P P P P
Sbjct: 100 GPPGPAGAPGKPGKPGR-PGAPGTPGTPGKPPVAPCEPTTPPPCKP-----CPQGPPGPP 153
Query: 980 XPPXPP 997
PP P
Sbjct: 154 GPPGAP 159
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 33.9 bits (74), Expect = 0.19
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P P P PP PP
Sbjct: 101 PGKPGKPGKPGAPGQPGTPGRPPQQ-PCEPTTPPPCQPCPQGPPGPP 146
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 33.9 bits (74), Expect = 0.19
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPP-----PXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P + P P P PP PP
Sbjct: 111 PGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPP 162
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 33.9 bits (74), Expect = 0.19
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P P P PP PP
Sbjct: 115 PGKPGKPGRPGAPGQP-GVPGKPPTAPCEPTTPPPCKPCPQGPPGPP 160
Score = 29.1 bits (62), Expect = 5.3
Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +2
Query: 803 GPSRXTGXSXXHGAXSXXPGAXPXPXXPG-XPXXPHXXXXPPPXXPKXXRXKPXXHPXPX 979
GP G G PGA P PG P P PPP P P P P
Sbjct: 107 GPPGPAGVPGKPGKPGR-PGAPGQPGVPGKPPTAPCEPTTPPPCKP-----CPQGPPGPP 160
Query: 980 XPPXPP 997
PP P
Sbjct: 161 GPPGAP 166
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 33.9 bits (74), Expect = 0.19
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPP-----PXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P + P P P PP PP
Sbjct: 111 PGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGPP 162
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 33.9 bits (74), Expect = 0.19
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPP-----PXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P + P P P PP PP
Sbjct: 111 PGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPP 162
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 33.9 bits (74), Expect = 0.19
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P P P PP PP
Sbjct: 115 PGKPGKPGRPGAPGQP-GVPGKPPTAPCEPTTPPPCKPCPQGPPGPP 160
Score = 29.1 bits (62), Expect = 5.3
Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +2
Query: 803 GPSRXTGXSXXHGAXSXXPGAXPXPXXPG-XPXXPHXXXXPPPXXPKXXRXKPXXHPXPX 979
GP G G PGA P PG P P PPP P P P P
Sbjct: 107 GPPGPAGVPGKPGKPGR-PGAPGQPGVPGKPPTAPCEPTTPPPCKP-----CPQGPPGPP 160
Query: 980 XPPXPP 997
PP P
Sbjct: 161 GPPGAP 166
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.32
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P P P PP PP
Sbjct: 111 PGKPGRPGKPGAPGLPGNPGRPPQQ-PCDPITPPPCQPCPQGPPGPP 156
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 33.1 bits (72), Expect = 0.32
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P P P PP PP
Sbjct: 78 PGKPGRPGKPGAPGLPGNPGHPPQQ-PCDPITPPPCQPCPQGPPGPP 123
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.32
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P P P PP PP
Sbjct: 111 PGKPGRPGKPGAPGLPGNPGRPPQQ-PCDPITPPPCQPCPQGPPGPP 156
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 33.1 bits (72), Expect = 0.32
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +2
Query: 848 SXXPGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXP 994
S P P P P P PPP P P P P PP P
Sbjct: 1333 SSSPSPPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPP 1381
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 858 PXPPXPXXPXGXLXXPTXXPXPHXPNXNXXAXNPHXIPXPXXPPXP 995
P PP P P PT P P P +P I P PP P
Sbjct: 1354 PVPPPPPPPPTMSKAPTGVPLPVPP--PPPLFSPSMILPPPPPPLP 1397
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.7 bits (71), Expect = 0.43
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +2
Query: 863 AXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
A P P P PPP P+ R P P P PP P
Sbjct: 120 ASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTP 164
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 849 AXXPXPPXPXXPXGXLXXPTXXPXPHXPNXNXXAXNPHXIPXPXXPPXPHXRXP 1010
A P PP P P P P P P P P PP P R P
Sbjct: 120 ASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRP-PMTPPSPQRRPP 172
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 32.7 bits (71), Expect = 0.43
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +2
Query: 839 GAXSXXPGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
G S P P P P P PPP P P P P PP PP
Sbjct: 21 GCCSMGPPPCPPPPPPMCAPPP-LPCPPPPICPPQFCPPPPMCPPPPPPPPPP 72
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +2
Query: 863 AXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
A P P P P PPP P P P P PP PP
Sbjct: 39 APPPLPCPPPPICPPQFCPPPPMCP----PPPPPPPPPMCPPPPP 79
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 32.3 bits (70), Expect = 0.56
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
P P P P P P PPP P P P P PP PP
Sbjct: 46 PMPMPMPVCPPPPPCPAQFCPPPPICP-----PPPPPPMPCPPPPPP 87
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.99
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = +2
Query: 800 VGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPX 979
VGP G G PGA P PG P PP P + P P P
Sbjct: 110 VGPPGPPGPPGRDGR----PGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGP-PGPA 164
Query: 980 XPPXP 994
PP P
Sbjct: 165 GPPGP 169
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/82 (26%), Positives = 22/82 (26%)
Frame = +2
Query: 749 PTQXXXPXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXXPHXXXXPPP 928
P P P P GP G PG P P P P PPP
Sbjct: 308 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 367
Query: 929 XXPKXXRXKPXXHPXPXXPPXP 994
P P H PP P
Sbjct: 368 --PSRPPAPPSGHGMIPPPPPP 387
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Frame = +2
Query: 848 SXXPGAXPXPXXPGX----PXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
S P P P PG P P PPP P R P P PP PP
Sbjct: 269 SVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR-TPGPPGMPGMPPPPP 321
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +3
Query: 858 PXPPXPXXPXGXLXXPTXXPXPHXPNXNXXAXNPHXIPXPXXPPXP 995
P PP P P P P PH + A P I PP P
Sbjct: 134 PPPPPPHYPPPPPHYPPPPPAPHSAYIDHSAPRPAYIEHSAPPPQP 179
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +2
Query: 863 AXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPPXXXA 1009
A P P P P H P P + P H P P PP A
Sbjct: 106 AVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPA 154
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +2
Query: 836 HGAXSXXPGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXP 994
H + P P P P+ PPP P P +P P PP P
Sbjct: 105 HAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPP--PPAP 155
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/82 (26%), Positives = 22/82 (26%)
Frame = +2
Query: 749 PTQXXXPXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXXPHXXXXPPP 928
P P P P GP G PG P P P P PPP
Sbjct: 318 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 377
Query: 929 XXPKXXRXKPXXHPXPXXPPXP 994
P P H PP P
Sbjct: 378 --PSRPPAPPSGHGMIPPPPPP 397
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Frame = +2
Query: 848 SXXPGAXPXPXXPGX----PXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
S P P P PG P P PPP P R P P PP PP
Sbjct: 279 SVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR-TPGPPGMPGMPPPPP 331
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/67 (28%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Frame = +2
Query: 800 VGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXXPHXXXXPPPXXP-KXXRXKPXXHPXP 976
V PS S P P P P P P P P P P P
Sbjct: 181 VDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSP 240
Query: 977 XXPPXPP 997
PP PP
Sbjct: 241 SDPPGPP 247
Score = 28.7 bits (61), Expect = 7.0
Identities = 20/77 (25%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
Frame = +2
Query: 767 PXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXXPHXXXXP-PPXXPKX 943
P P P+ V PS S P P P P P P P
Sbjct: 153 PVDPSEDPQPSVEPSEDPQPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSP 212
Query: 944 XRXKPXXHPXPXXPPXP 994
P P P PP P
Sbjct: 213 GPVDPSEDPKPSEPPSP 229
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXP--PPXXPKXXRXKPXXHPXPXXPPXPP 997
PGA P PG P P P P P P P P PP P
Sbjct: 111 PGAPGKPGRPGKPGAPGFPGNPGKAPQKPCEEITPPPCKPCPQGPPGAP 159
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXP--PPXXPKXXRXKPXXHPXPXXPPXPP 997
PGA P PG P P P P P P P P PP P
Sbjct: 111 PGAPGKPGRPGKPGAPGFPGNPGKAPQKPCEEITPPPCKPCPQGPPGAP 159
>Z72502-7|CAA96592.1| 140|Caenorhabditis elegans Hypothetical
protein C08B6.10 protein.
Length = 140
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 817 HGXQXPPWRXXPXPRXXPXPXXPXXPXGAPP 909
H PPW P R P P P P PP
Sbjct: 104 HHHHRPPWMRGPWWRRPPPPWGPPPPGPPPP 134
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical protein
T28C6.1 protein.
Length = 281
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -3
Query: 1009 GXRXWGXGGXXGXGMXXGFXAXXFXXGXWGXGXXVGXXRXPXGXWGWG 866
G + G GG G G G G WG G G R G WG G
Sbjct: 234 GQQGGGRGGQQGPGGWGG-GGRGGGWGGWGRGSRWGWGRPSWGGWGRG 280
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
P P P P PPP P P P PP PP
Sbjct: 477 PSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPP 523
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P P P PP P
Sbjct: 102 PGRPGRPGKPGVPGMP-GNPGKPPQQPCELVTPPPCSPCPAGPPGKP 147
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +2
Query: 836 HGAXSXXPGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXP 994
H PG P PG P P PP + + P +P P PP P
Sbjct: 97 HPGRPGLPGRNGKPGVPGAPGRPGTPGRPPIVCEE--QDVPPCNPCPPGPPGP 147
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP P P P P P PP
Sbjct: 116 PGNPGRPGKPGAPGLP-GNPGKPPVQPCEPITPPPCKPCPDGPAGPP 161
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXP--PPXXPKXXRXKPXXHPXPXXPPXP 994
PG PG P P P PP P P P P PP P
Sbjct: 100 PGTPGSAGRPGKPGAPGLNGNPGRPPKEPCEPLTPPPCKPCPEGPPGP 147
>AF022983-5|AAK82915.1| 79|Caenorhabditis elegans Hypothetical
protein R13D11.10 protein.
Length = 79
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = -3
Query: 1003 RXWGXGGXXGXGMXXGFXAXXFXX-GXWGXGXXVGXXRXPXGXWGWG 866
R WG G G G G+ + G WG G G WGWG
Sbjct: 34 RQWG--GWGGRGGYGGYGYRPYGGYGGWGGRGMGGWGGRGMGGWGWG 78
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXP--PPXXPKXXRXKPXXHPXPXXPPXP 994
PG PG P P P PP P P P P PP P
Sbjct: 98 PGTPGRAGRPGKPGAPGLNGNPGRPPKEPCEPITPPPCKPCPEGPPGP 145
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P P + P P P PP PP
Sbjct: 118 PGKPGKPGKPGAPGAP-GAAGKGASAPCEAKTPPPCQPCPAGPPGPP 163
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P PP + +P P P P PP
Sbjct: 111 PGKNGAPGRPGAPGAPGFPGRPPAVCEEI--TEPPCTPCPPGEPGPP 155
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 7.0
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -1
Query: 1008 AXXXGGXGGXXGXGXNXGXXRXXXGXXG-GGXXFXWGXXGXPGXXGXGXAPGXXLXAP 838
A GG GG G G G G GG G G PG G PG AP
Sbjct: 81 AYSTGGAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAP 138
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +3
Query: 858 PXPPXPXXPXGXLXXPTXXPXPHXPNXNXXAXNPHXIPXPXXPPXP 995
P P P P G P P P P+ N + P P PP P
Sbjct: 146 PCQPCPGGPPGPAG-PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 7.0
Identities = 23/86 (26%), Positives = 26/86 (30%), Gaps = 3/86 (3%)
Frame = +2
Query: 749 PTQXXXPXXPKCWPKKXVGPSRXTGXSXXHGAXSXX-PGAXPXPXXPGXPXXPHXXXXP- 922
P+ P P P GP+ G GA P P P P+ P
Sbjct: 142 PSCVKCPEGP-AGPPGPEGPAGPAGSDGQPGAPGDAGKDGPPGPPGPDGDSGPNGEAGPN 200
Query: 923 -PPXXPKXXRXKPXXHPXPXXPPXPP 997
P P K P P PP PP
Sbjct: 201 GEPGAPGKDGEKGKGEPGPAGPPGPP 226
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 7.0
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -1
Query: 1008 AXXXGGXGGXXGXGXNXGXXRXXXGXXG-GGXXFXWGXXGXPGXXGXGXAPGXXLXAP 838
A GG GG G G G G GG G G PG G PG AP
Sbjct: 81 AYSTGGAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAP 138
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +3
Query: 858 PXPPXPXXPXGXLXXPTXXPXPHXPNXNXXAXNPHXIPXPXXPPXP 995
P P P P G P P P P+ N + P P PP P
Sbjct: 146 PCQPCPGGPPGPAG-PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 7.0
Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Frame = +2
Query: 749 PTQXXXPXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXXPHXXXXP-P 925
P+ P P P+ P G S G PG P P P PH P P
Sbjct: 51 PSDLPDPSSPPPAPRPSGQPPGPQGPSDLPGPSGAPPG-PPHPSGPPHRPHPHPSRRPRP 109
Query: 926 PXXPKXXRXKPXXHPXP 976
P+ R P P
Sbjct: 110 TRLPRPSRSPHSDAPEP 126
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 7.0
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -1
Query: 1008 AXXXGGXGGXXGXGXNXGXXRXXXGXXG-GGXXFXWGXXGXPGXXGXGXAPGXXLXAP 838
A GG GG G G G G GG G G PG G PG AP
Sbjct: 81 AYSTGGAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAP 138
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +3
Query: 858 PXPPXPXXPXGXLXXPTXXPXPHXPNXNXXAXNPHXIPXPXXPPXP 995
P P P P G P P P P+ N + P P PP P
Sbjct: 146 PCQPCPGGPPGPAG-PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 7.0
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -1
Query: 1008 AXXXGGXGGXXGXGXNXGXXRXXXGXXG-GGXXFXWGXXGXPGXXGXGXAPGXXLXAP 838
A GG GG G G G G GG G G PG G PG AP
Sbjct: 81 AYSTGGAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAP 138
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +3
Query: 858 PXPPXPXXPXGXLXXPTXXPXPHXPNXNXXAXNPHXIPXPXXPPXP 995
P P P P G P P P P+ N + P P PP P
Sbjct: 146 PCQPCPGGPPGPAG-PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.3 bits (60), Expect = 9.2
Identities = 23/86 (26%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Frame = +2
Query: 749 PTQXXXPXXPKCWPKKXVGPSRXTGXSXXHGAXSXXPGAXPXPXXPGXPXXPHXXXX--- 919
PT+ P P P S T S + P P P P
Sbjct: 429 PTRVAPPPPPSAPPTIKFPISTGTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKS 488
Query: 920 PPPXXPKXXRXKPXXHPXPXXPPXPP 997
PPP P P P P PP PP
Sbjct: 489 PPPPPPLPPIATPSSVPPP--PPPPP 512
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +2
Query: 857 PGAXPXPXXPGXPXXPHXXXXPPPXXPKXXRXKPXXHPXPXXPPXPP 997
PG P PG P P P + P P P PP PP
Sbjct: 117 PGKPGKPGKPGAPGNP-GAPGKGAAVPCEAKTPPPCKPCPAGPPGPP 162
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -1
Query: 993 GXGGXXGXGXNXGXXRXXXGXXGGGXXFXWGXXGXPGXXGXGXAPG 856
G GG G G G G G G G PG G APG
Sbjct: 96 GGGGGGGGGEAAGGGGGCTGCCNPGPPGPGGRPGKPGTPGKPGAPG 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,066,101
Number of Sequences: 27780
Number of extensions: 163310
Number of successful extensions: 1497
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2657408452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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