Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O09
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    80   3e-15
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     79   4e-15
07_03_0078 - 13147741-13148913                                         30   2.3  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 38/56 (67%), Positives = 45/56 (80%)
 Frame = +2

Query: 236 LVREVVGHAQYEKRAMELLKVSXDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 403
           L+REVVG A YEKR  ELLKV  DKRALK  KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 46  LIREVVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 79.4 bits (187), Expect = 4e-15
 Identities = 38/57 (66%), Positives = 45/57 (78%)
 Frame = +2

Query: 233 DLVREVVGHAQYEKRAMELLKVSXDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 403
           +L+REV G A YEKR  ELLKV  DKRALK  KR+LGTH RAK+KREE++ VL +MR
Sbjct: 45  NLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 188 AGLILMALSVIPLRPADILVVLWPF 114
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,579
Number of Sequences: 37544
Number of extensions: 234391
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)