Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O09
         (925 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.               100   1e-20
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...   100   1e-20
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...   100   1e-20
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...   100   1e-20
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...   100   1e-20
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    61   5e-09

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score = 99.5 bits (237), Expect = 1e-20
 Identities = 47/58 (81%), Positives = 53/58 (91%)
 Frame = +2

Query: 233 DLVREVVGHAQYEKRAMELLKVSXDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 406
           D++REV G A YE+RAMELLKVS DKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 42  DMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 85  LXFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFV 228
           L + +AVGL KGHK TK             + R +R +G  TKH+KFV
Sbjct: 3   LRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFV 40


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 99.5 bits (237), Expect = 1e-20
 Identities = 47/58 (81%), Positives = 53/58 (91%)
 Frame = +2

Query: 233 DLVREVVGHAQYEKRAMELLKVSXDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 406
           D++REV G A YE+RAMELLKVS DKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 42  DMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 85  LXFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFV 228
           L + +AVGL KGHK TK             + R +R +G  TKH+KFV
Sbjct: 3   LRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFV 40


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 99.5 bits (237), Expect = 1e-20
 Identities = 47/58 (81%), Positives = 53/58 (91%)
 Frame = +2

Query: 233 DLVREVVGHAQYEKRAMELLKVSXDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 406
           D++REV G A YE+RAMELLKVS DKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 42  DMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 85  LXFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFV 228
           L + +AVGL KGHK TK             + R +R +G  TKH+KFV
Sbjct: 3   LRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFV 40


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 99.5 bits (237), Expect = 1e-20
 Identities = 47/58 (81%), Positives = 53/58 (91%)
 Frame = +2

Query: 233 DLVREVVGHAQYEKRAMELLKVSXDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 406
           D++REV G A YE+RAMELLKVS DKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 42  DMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 85  LXFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFV 228
           L + +AVGL KGHK TK             + R +R +G  TKH+KFV
Sbjct: 3   LRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFV 40


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 99.5 bits (237), Expect = 1e-20
 Identities = 47/58 (81%), Positives = 53/58 (91%)
 Frame = +2

Query: 233 DLVREVVGHAQYEKRAMELLKVSXDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 406
           D++REV G A YE+RAMELLKVS DKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 42  DMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 85  LXFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFV 228
           L + +AVGL KGHK TK             + R +R +G  TKH+KFV
Sbjct: 3   LRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFV 40


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 61.3 bits (142), Expect = 5e-09
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = +2

Query: 290 LKVSXDKRALKFLKRRLGTHIRAKRKREELSN 385
           LKVS DKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,545,719
Number of Sequences: 237096
Number of extensions: 1250250
Number of successful extensions: 1857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1852
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)