Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_O07
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 47 4e-06
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 38 0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.014
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.044
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.058
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 2.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.8
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 26 8.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 46.8 bits (106), Expect = 4e-06
Identities = 31/109 (28%), Positives = 32/109 (29%), Gaps = 2/109 (1%)
Frame = +1
Query: 355 APPTP-GKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGP 531
APP P PP P P PP G P PP S P P P P
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
Query: 532 XAPPP-EAPXXXXPXXPXXXXXXXXXXXXXXXXXKXXPPPPXNXXETPP 675
PPP EAP P PP P + PP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 39.5 bits (88), Expect = 7e-04
Identities = 28/106 (26%), Positives = 28/106 (26%), Gaps = 1/106 (0%)
Frame = +1
Query: 361 PTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXAP 540
P P PP P P PP G P PP SG P P P P P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP-PVPKPSVAAPPVP 1153
Query: 541 PPE-APXXXXPXXPXXXXXXXXXXXXXXXXXKXXPPPPXNXXETPP 675
P AP P PP E PP
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 35.9 bits (79), Expect = 0.008
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Frame = +1
Query: 361 PTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXAP 540
P P PP P P PP G P PP S P P P P P
Sbjct: 1182 PKPAAGVPPVP-PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Query: 541 PP--EAPXXXXP 570
P EAP P
Sbjct: 1241 APSSEAPSVSTP 1252
Score = 34.7 bits (76), Expect = 0.019
Identities = 29/112 (25%), Positives = 29/112 (25%), Gaps = 3/112 (2%)
Frame = +1
Query: 349 SXAPPTPG-KXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXX 525
S APP P PP P P PP P PP S P P P
Sbjct: 1080 SGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS-VAAPPVPVPSG 1138
Query: 526 GPXAPPPE--APXXXXPXXPXXXXXXXXXXXXXXXXXKXXPPPPXNXXETPP 675
P P P AP P PP P PP
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Score = 32.7 bits (71), Expect = 0.077
Identities = 24/75 (32%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = +1
Query: 349 SXAPPTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXG 528
S AP P PP P P P G P P PP S P P P
Sbjct: 1057 SGAPSAP----PPVPAPSSEIPSIPAPSGAP-PVPAPSGIPPVPKPSVAAPPVPKPSVAV 1111
Query: 529 PXAPPPE-APXXXXP 570
P P P AP P
Sbjct: 1112 PPVPAPSGAPPVPKP 1126
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = +1
Query: 358 PPTP--GKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGP 531
PP P PP P P PP P P PP S P PPP P
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAP-PVPIPTSTPP-VPKSSSGAPSAPPPVPAP 1069
Query: 532 XAPPPEAP 555
+ P P
Sbjct: 1070 SSEIPSIP 1077
Score = 30.7 bits (66), Expect = 0.31
Identities = 16/65 (24%), Positives = 18/65 (27%)
Frame = +1
Query: 358 PPTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXA 537
P P PP P P PP P PP + P P P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSV 1249
Query: 538 PPPEA 552
P +
Sbjct: 1250 STPRS 1254
Score = 30.3 bits (65), Expect = 0.41
Identities = 22/77 (28%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Frame = +1
Query: 355 APPTPG-KXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGP 531
APP P PP P P P G P P P P PP P
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGA--PSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088
Query: 532 XA-PPPEAPXXXXPXXP 579
PP P P P
Sbjct: 1089 SGIPPVPKPSVAAPPVP 1105
Score = 28.7 bits (61), Expect = 1.3
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Frame = +1
Query: 349 SXAPPTP-GKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXX 525
S APP P PP P P P P G PP P
Sbjct: 1038 STAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097
Query: 526 GPXAPPPEAPXXXXPXXP 579
APP P P P
Sbjct: 1098 SVAAPPVPKPSVAVPPVP 1115
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/70 (27%), Positives = 19/70 (27%)
Frame = +1
Query: 361 PTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXAP 540
P P P P P PP G P PP S P P P P P
Sbjct: 1067 PAPSSEIPSIPAPSGA-PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG-APPVP 1124
Query: 541 PPEAPXXXXP 570
P P
Sbjct: 1125 KPSVAAPPVP 1134
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +1
Query: 814 PQNAHKXPPTKPXXPPXXKPXXXPPXPXXRXAAXP-HXPTAG 936
P A P PP P PP P AA P P++G
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 37.5 bits (83), Expect = 0.003
Identities = 22/66 (33%), Positives = 23/66 (34%)
Frame = -2
Query: 554 GASGGGAXGPXXGGGGXGPXXPLXXXPGGXXGFXXXGXGPPPXPXXGGXXXXGPGXGGXX 375
G GGG+ GP G GG G G G GP G GPG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 374 FPGVGG 357
G GG
Sbjct: 251 LGGFGG 256
Score = 29.1 bits (62), Expect = 0.95
Identities = 25/66 (37%), Positives = 26/66 (39%)
Frame = -2
Query: 554 GASGGGAXGPXXGGGGXGPXXPLXXXPGGXXGFXXXGXGPPPXPXXGGXXXXGPGXGGXX 375
G +GGG G GGG GP PGG GF G GG G G GG
Sbjct: 184 GHNGGGFGG--FGGGSGGP----PPGPGGFGGFGGFGG---EGHHHGGHGGFGGGPGGFE 234
Query: 374 FPGVGG 357
G GG
Sbjct: 235 -GGPGG 239
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.014
Identities = 25/64 (39%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +1
Query: 349 SXAPPTPGKXXP-PXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXX 525
S PP P P P P P PP GGP P P PPG G PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAP-IMGGPPP----PPPPPGVA-----GAGPPPPPP 780
Query: 526 GPXA 537
P A
Sbjct: 781 PPPA 784
Score = 33.9 bits (74), Expect = 0.033
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +1
Query: 382 PPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXAPPPEAP 555
PP P P P P P P PP G P PPP G PPP P
Sbjct: 732 PPPPPPAVIVPTP-----APAPI---PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 30.3 bits (65), Expect = 0.41
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Frame = +1
Query: 361 PTPGKXXPPXP---GPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGP 531
P P PP P GP PP G GP P P PP +G P P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Frame = +1
Query: 439 PXPXXXKPXXPPGXXXSGXXGPXPPPP-----XXGPXAPPPEAP 555
P P PP G GP PPPP GP PPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMG--GPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 639 PXXXPQPXXNPPPXXXGGAXXTXPPPPRAXXKKNXPXP 752
P P P PPP G PPPP P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 657 PXXNPPPXXXGGAXXTXPPPP 719
P PPP GA PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 639 PXXXPQPXXNPPPXXXGGAXXTXPPPPRA 725
P P PPP G PPPP A
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 23.8 bits (49), Expect(2) = 3.6
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -3
Query: 280 PXPPXXFXXGGPPPP 236
P PP GPPPP
Sbjct: 764 PPPPPGVAGAGPPPP 778
Score = 21.4 bits (43), Expect(2) = 3.6
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = -3
Query: 436 PPPXPXXGGXXXXAPXXG 383
PPP P GG P G
Sbjct: 752 PPPAPIMGGPPPPPPPPG 769
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.044
Identities = 20/63 (31%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Frame = +2
Query: 383 PPXRGXXXXXPPXGGGGGXPXXPXKNPPXRRGXXXV------GXXGPXPPPPXXAPXPPR 544
PP PP G G P PP R G P PPPP AP R
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 545 XKP 553
P
Sbjct: 375 QPP 377
Score = 33.1 bits (72), Expect = 0.058
Identities = 26/105 (24%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Frame = +1
Query: 382 PPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPP------XXGPXAPP 543
PP P P P G P P + PP S PPP P APP
Sbjct: 337 PPPPPP----PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Query: 544 PEAPXXXXPXXPXXXXXXXXXXXXXXXXXKXXPPPPXNXXETPPP 678
P P P P P P + + PP
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 32.3 bits (70), Expect = 0.10
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 373 KXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXAPPPEA 552
K PP P P G G P PP + P PP P PPP +
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/70 (27%), Positives = 19/70 (27%)
Frame = +1
Query: 361 PTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXAP 540
PTP P P P G P P P PP P P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 541 PPEAPXXXXP 570
P AP P
Sbjct: 478 PAPAPAPAAP 487
Score = 29.1 bits (62), Expect = 0.95
Identities = 19/73 (26%), Positives = 22/73 (30%)
Frame = +1
Query: 361 PTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXAP 540
P+ G+ PP P P P PP S P P P P +
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPA--IPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA 427
Query: 541 PPEAPXXXXPXXP 579
PP P P P
Sbjct: 428 PPSLPPSAPPSLP 440
Score = 29.1 bits (62), Expect = 0.95
Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Frame = +1
Query: 349 SXAPPTPGKXXPPXPGPXXXXPPXXGXGG--GPXPXXXKPXXPPGXXXSGXXGPXPPPPX 522
S A P P PG P G P P PP S P P
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM 441
Query: 523 XGPXAP--PPEAP 555
P AP PP AP
Sbjct: 442 GAPAAPPLPPSAP 454
Score = 26.6 bits (56), Expect = 5.1
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = +1
Query: 358 PPTPGKXXPPXP----GPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXG-PXPPP-P 519
P PG+ P P PP P P PP S G P PP P
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPS--LPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Query: 520 XXGPXAPPPEAPXXXXPXXP 579
P APP A P P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLP 470
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/63 (26%), Positives = 18/63 (28%)
Frame = +1
Query: 358 PPTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXA 537
PP+ PP P G P P PP P PP P A
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
Query: 538 PPP 546
P P
Sbjct: 480 PAP 482
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/39 (28%), Positives = 14/39 (35%)
Frame = +3
Query: 669 PPPXXXGGAXXTXPPPPRAXXKKNXPXPXXXXGAXNRPP 785
PPP A + P PP+ P P +PP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 835 PPTKPXXPPXXKPXXXPPXPXXRXAAXPHXPTAGXA 942
P P PP P P P AA P P+A A
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.058
Identities = 19/63 (30%), Positives = 19/63 (30%)
Frame = +1
Query: 391 PGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXAPPPEAPXXXXP 570
P PP P P P PP PP P P APPP P P
Sbjct: 1683 PAHPVSTPPVRPQSAAP-PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Query: 571 XXP 579
P
Sbjct: 1742 SVP 1744
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +1
Query: 385 PXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXAPPPEAP 555
P P PP P P P P PPPP AP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 475 GXXXSGXXGPXPPPPXXGPXAPPPEA 552
G S P PPPP P A PP A
Sbjct: 1873 GSDLSNQAAPPPPPPMALPKAGPPSA 1898
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +1
Query: 358 PPTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPXA 537
PPT P P P P P P P P PP P A
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS-----PPSAPSLPSA 193
Query: 538 PPPEAPXXXXP 570
PP P P
Sbjct: 194 VPPMPPKVPPP 204
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/64 (28%), Positives = 19/64 (29%)
Frame = +1
Query: 355 APPTPGKXXPPXPGPXXXXPPXXGXGGGPXPXXXKPXXPPGXXXSGXXGPXPPPPXXGPX 534
APP P PP P P P +P P S P PP
Sbjct: 143 APPRPS-IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKV 201
Query: 535 APPP 546
PPP
Sbjct: 202 PPPP 205
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 490 GXXGPXPPPPXXGPXAPPPEAP 555
G P PPPP P + PP P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPP 28
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Frame = +1
Query: 502 PXPPPPXXG---PXAPPPEAP 555
P PPPP G P PPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 651 PQPXXNPPPXXXGGAXXTXPPPPR 722
PQP N P GGA + PPR
Sbjct: 491 PQPSSNVPTKFTGGASESSSVPPR 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.153 0.569
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,151
Number of Sequences: 5004
Number of extensions: 27798
Number of successful extensions: 246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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