Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_O06
(929 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac... 66 5e-12
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 32 0.13
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 29 0.93
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 27 3.8
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 27 3.8
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 8.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 8.7
>SPAC16C9.02c |||S-methyl-5-thioadenosine
phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 66.5 bits (155), Expect = 5e-12
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 4/182 (2%)
Frame = +3
Query: 315 VTPFGRP-SDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHXLATT 491
+TP+G P S + I LARHG H P++V RANI ALK +G ++ +
Sbjct: 33 ITPWGYPASPISIARTTSGFLIAFLARHGVGHIYTPTEVPSRANIAALKSLGVLAIVSFS 92
Query: 492 XTGSLVEEYRPGDLVILDDFIDRT-WGRKCTFYDN--TEXXXXXXXXXXXXRRIVXXPXP 662
GSL E+ P D V+ IDRT R TF+++ I+
Sbjct: 93 AVGSLREDIPPEDFVLPTQIIDRTLCARPNTFFESGCVAHVSFGDPFDQDLYEILSSCGS 152
Query: 663 HCTARPSLXGTRAMKPALRLSYRGPKFSXRXXSLVHKQXGWPXVNMTTVPEVVLXKKXGX 842
+ L R + GP FS R S +++ G +NM+ +PE L ++
Sbjct: 153 NLKNGSKLHTKRKGDDLTVVCMEGPAFSTRAESNLYRSWGASIINMSVIPEAKLAREAEI 212
Query: 843 IY 848
Y
Sbjct: 213 AY 214
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 31.9 bits (69), Expect = 0.13
Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 3/162 (1%)
Frame = +3
Query: 363 KRVQCVLLARHGRKHQLQPSDVNYRA-NIWALKQVGCTHXLATTXTGSLVEEYRPGDLVI 539
KRV ++LA GR H + + + +K +G + T G L + ++ GDL+I
Sbjct: 93 KRVPTMILA--GRYHSYEGYPIEATTFPVRLMKVMGVEVMVVTNAAGGLNQGFKVGDLMI 150
Query: 540 LDDFIDRTW--GRKCTFYDNTEXXXXXXXXXXXXRRIVXXPXPHCTARPSLXGTRAMKPA 713
L D I+ G N + + A+ +R +
Sbjct: 151 LKDHINFPGLAGMNPLRGPNAHEFGVRFPPLSDAYDLELRKLVYDAAKAHKV-SRTIHEG 209
Query: 714 LRLSYRGPKFSXRXXSLVHKQXGWPXVNMTTVPEVVLXKKXG 839
GP F R S + G V M+TVPEVV+ + G
Sbjct: 210 CYAFVSGPCFETRAESRMLALMGADCVGMSTVPEVVVARHCG 251
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 29.1 bits (62), Expect = 0.93
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 216 LNYSTLYTPIQELSYFS*ISNPLYYVVTFIIYLIKHRNFKN 94
LN +L T +SYF+ +++ L + IY I+ +NFKN
Sbjct: 212 LNTGSLITAKPLISYFNLLTSCLIIFPSIWIYAIEKKNFKN 252
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 3.8
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Frame = -1
Query: 377 ALDPFDLTLYQYVRGSPKRCDHL----LFDLILEKRRIIEARTS---DNSDLYFSYIAHI 219
+L+ +D LY+ R +P+R + LFD I+ + + + + DL+ + H+
Sbjct: 224 SLNDYDKKLYE--RAAPERNRLVESISLFDSIINSQWFMHSSIILFLNKFDLFRKKLEHV 281
Query: 218 D*TIQHYTHRYKNFPISVK*VTPYIMWLLL 129
Q Y +Y+ SVK +T YI+WL +
Sbjct: 282 P--FQDYFPQYEG-KNSVKSITRYILWLFV 308
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 27.1 bits (57), Expect = 3.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 501 SLVEEYRPGDLVILDDF 551
++V YRPGDL+++ D+
Sbjct: 210 NIVSNYRPGDLILIHDY 226
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 403 NINFNLAM*TIELIFGH*SKSAALTXSPRPXPGL*LKNTGLEIWSYWTISLI 558
N++F +++ +L+F + T KN + IW+YW ++LI
Sbjct: 550 NVDFEVSVLASQLVFFVKHRDFKRTLITMKAISKLQKNFDVRIWNYWLVALI 601
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +3
Query: 291 ENQIEKEVVTPFGRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQ 461
+++++ E+ P ++ Q+ A H R LQPS + + WAL Q
Sbjct: 1126 KDEVKAEMTQPVVNQDSHDLQDQLATTPTAPTAFHYRPGLLQPSQTSVQHCCWALSQ 1182
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +3
Query: 291 ENQIEKEVVTPFGRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQ 461
+++++ E+ P ++ Q+ A H R LQPS + + WAL Q
Sbjct: 1126 KDEVKAEMTQPVVNQDSHDLQDQLATTPTAPTAFHYRPGLLQPSQTSVQHCCWALSQ 1182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,867
Number of Sequences: 5004
Number of extensions: 58943
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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