Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O05
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.76 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 17/85 (20%), Positives = 39/85 (45%)
 Frame = +2

Query: 119 LRIVAVNKNNNIMDALSTGTLSGAQKEELMDQVKQQIAIANAQELLTKMTEKCFKKCINK 298
           L + AV+KN  ++  L+  TLS   + + +D+    + +A  ++ L  +     K+ + +
Sbjct: 305 LTVKAVSKNGVLLFGLANNTLSCWNEHQSLDRQNIDV-VARNEDTLQMVVSMKIKQNVPQ 363

Query: 299 PGTSLDSSEQKCIAMCMDRYMDSWN 373
            G   ++   + +    DR  +  N
Sbjct: 364 SGRVNNTQRNEYLLALSDRNQNVLN 388


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 146 NNIMDALSTGTLS 184
           NN +DAL TGT+S
Sbjct: 471 NNALDALRTGTIS 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,301
Number of Sequences: 438
Number of extensions: 4266
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)