Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_O04
(913 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein... 216 2e-56
Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein... 216 2e-56
U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein p... 216 2e-56
Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical p... 29 3.5
Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical p... 28 8.1
Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical p... 28 8.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 8.1
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 28 8.1
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 8.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 8.1
AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical... 28 8.1
AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical... 28 8.1
AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin ... 28 8.1
AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin ... 28 8.1
>Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 216 bits (527), Expect = 2e-56
Identities = 110/205 (53%), Positives = 136/205 (66%), Gaps = 5/205 (2%)
Frame = +2
Query: 77 ISDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRL 256
ISD EKVRI SDFI H+PPGEFNEVFN VR+LL ND LLK A AQYN Q PV+L
Sbjct: 4 ISDAEKVRIASDFIKHAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKL 63
Query: 257 EGSELYTLITDHNELGGGRFFDPRSKCSFRYDHLRKEASEYEPYEPDRA-AEPWRAALDE 433
+G TLIT +N+LG GRF+D SK SF+YDH+RKEA++ +P+ + E WR AL
Sbjct: 64 DGVAKQTLITPYNDLGNGRFYDEVSKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQT 123
Query: 434 ELTAYVAAHY-KHGAS*VVGRTVDSGTVQLVACIEXHQFQPKNYWNGRWRSVWSLTVG-- 604
+L Y+ HY K G V R +G + CIE HQFQPKN+ NGRWRS W++ VG
Sbjct: 124 QLDIYIDDHYAKSGTGVVFAR---NGVFTI--CIESHQFQPKNFCNGRWRSEWNVPVGDG 178
Query: 605 -GPATKLRGTLRVQVHYYXDGNVQL 676
+ +++G + QVHYY DGNVQL
Sbjct: 179 KSGSQEMKGKILSQVHYYEDGNVQL 203
>Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 216 bits (527), Expect = 2e-56
Identities = 110/205 (53%), Positives = 136/205 (66%), Gaps = 5/205 (2%)
Frame = +2
Query: 77 ISDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRL 256
ISD EKVRI SDFI H+PPGEFNEVFN VR+LL ND LLK A AQYN Q PV+L
Sbjct: 4 ISDAEKVRIASDFIKHAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKL 63
Query: 257 EGSELYTLITDHNELGGGRFFDPRSKCSFRYDHLRKEASEYEPYEPDRA-AEPWRAALDE 433
+G TLIT +N+LG GRF+D SK SF+YDH+RKEA++ +P+ + E WR AL
Sbjct: 64 DGVAKQTLITPYNDLGNGRFYDEVSKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQT 123
Query: 434 ELTAYVAAHY-KHGAS*VVGRTVDSGTVQLVACIEXHQFQPKNYWNGRWRSVWSLTVG-- 604
+L Y+ HY K G V R +G + CIE HQFQPKN+ NGRWRS W++ VG
Sbjct: 124 QLDIYIDDHYAKSGTGVVFAR---NGVFTI--CIESHQFQPKNFCNGRWRSEWNVPVGDG 178
Query: 605 -GPATKLRGTLRVQVHYYXDGNVQL 676
+ +++G + QVHYY DGNVQL
Sbjct: 179 KSGSQEMKGKILSQVHYYEDGNVQL 203
>U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein
protein 1 protein.
Length = 282
Score = 216 bits (527), Expect = 2e-56
Identities = 110/205 (53%), Positives = 136/205 (66%), Gaps = 5/205 (2%)
Frame = +2
Query: 77 ISDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRL 256
ISD EKVRI SDFI H+PPGEFNEVFN VR+LL ND LLK A AQYN Q PV+L
Sbjct: 4 ISDAEKVRIASDFIKHAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKL 63
Query: 257 EGSELYTLITDHNELGGGRFFDPRSKCSFRYDHLRKEASEYEPYEPDRA-AEPWRAALDE 433
+G TLIT +N+LG GRF+D SK SF+YDH+RKEA++ +P+ + E WR AL
Sbjct: 64 DGVAKQTLITPYNDLGNGRFYDEVSKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQT 123
Query: 434 ELTAYVAAHY-KHGAS*VVGRTVDSGTVQLVACIEXHQFQPKNYWNGRWRSVWSLTVG-- 604
+L Y+ HY K G V R +G + CIE HQFQPKN+ NGRWRS W++ VG
Sbjct: 124 QLDIYIDDHYAKSGTGVVFAR---NGVFTI--CIESHQFQPKNFCNGRWRSEWNVPVGDG 178
Query: 605 -GPATKLRGTLRVQVHYYXDGNVQL 676
+ +++G + QVHYY DGNVQL
Sbjct: 179 KSGSQEMKGKILSQVHYYEDGNVQL 203
>Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.10 protein.
Length = 376
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 365 EASEYEPYEPDRAAEPWRAALDEELT 442
E E EP P+ + WR+ +DEELT
Sbjct: 80 EVPEREPSTPNNSRSNWRSDMDEELT 105
>Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical
protein Y57G11C.42 protein.
Length = 661
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 593 KTTPNATD-RSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPP 417
+TTP+ R S V GD Y P ++ + D P S P PL P Q PP
Sbjct: 196 RTTPDPRIIRPPESLVVIGD--YDEDEPPSENAVVDSPQP--FVTSPPPAQPLFPQQTPP 251
Query: 416 AKAQPL 399
A PL
Sbjct: 252 PPASPL 257
>Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 590 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 411
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1028 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1079
Query: 410 AQPLDRAR 387
PL R
Sbjct: 1080 TIPLPPTR 1087
>Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 590 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 411
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1022 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1073
Query: 410 AQPLDRAR 387
PL R
Sbjct: 1074 TIPLPPTR 1081
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.3 bits (60), Expect = 8.1
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 8/145 (5%)
Frame = +3
Query: 180 TIPCSRKVLVEPSLNTTRINSRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIY 359
T+P S + S +++ +S P PS S+PT E ++L+ S +SG T +
Sbjct: 1391 TVPSSTQSFSSTSEGSSKASSSP----VPSQTSSTPTNPTGSTESSTLLS-STISGSTQH 1445
Query: 360 -AKKRPSMNPTSPIERLSLGGRHLMRS*RRTWLHTTS-------MVLVKWWVAQSTLVRY 515
+ S TSP G M S + + T+S M + A ST+
Sbjct: 1446 TTMSKASSGSTSPSTNSQTGSTVTMGSSSTSGVSTSSASSTQPQMSTSQGSSAGSTVASS 1505
Query: 516 SWSPVSXITSFNPRTIGTVGGVRCG 590
+ SP + T+ P + GT+ G
Sbjct: 1506 TASPAASSTA--PSSTGTMSSTSSG 1528
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 651 IMXMVMYNCELKELSSLVLPGNXXAKIRRLF*CKSSMPSTF 773
+M ++ +N + +SSLVL G K+R + C ++ TF
Sbjct: 227 LMKLLQHNARIIVVSSLVLIGYLDEKVRDMVYCTENVHDTF 267
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 180 TIPCSRKVLVEPSLNTTRINSRPYV-SKAPSCIHSSPTTTNL--VAEGFSILAPSVLSGM 350
T P + + V PS + T + P S +P+ SPT+ + + +S +PS
Sbjct: 1599 TSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSS 1658
Query: 351 TIYAKKRPSMNPTSP 395
Y+ PS +P+SP
Sbjct: 1659 PSYSPSSPSYSPSSP 1673
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 180 TIPCSRKVLVEPSLNTTRINSRPYV-SKAPSCIHSSPTTTNL--VAEGFSILAPSVLSGM 350
T P + + V PS + T + P S +P+ SPT+ + + +S +PS
Sbjct: 1606 TSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSS 1665
Query: 351 TIYAKKRPSMNPTSP 395
Y+ PS +P+SP
Sbjct: 1666 PSYSPSSPSYSPSSP 1680
>AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 590 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 411
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1028 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1079
Query: 410 AQPLDRAR 387
PL R
Sbjct: 1080 TIPLPPTR 1087
>AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 590 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 411
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1022 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1073
Query: 410 AQPLDRAR 387
PL R
Sbjct: 1074 TIPLPPTR 1081
>AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin
UNC-26B protein.
Length = 1113
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 590 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 411
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1022 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1073
Query: 410 AQPLDRAR 387
PL R
Sbjct: 1074 TIPLPPTR 1081
>AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin
UNC-26A protein.
Length = 1119
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 590 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 411
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1028 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1079
Query: 410 AQPLDRAR 387
PL R
Sbjct: 1080 TIPLPPTR 1087
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,225,622
Number of Sequences: 27780
Number of extensions: 401104
Number of successful extensions: 1052
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -