Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O04
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.55 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 216 SLNTTRINSRPYVSKAPSCIHSSPTTTNL 302
           SL+ T  N + Y S+    +HS P+T N+
Sbjct: 364 SLDNTNTNDQDYSSQNYLTVHSFPSTLNI 392


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 317 FDPRSKCSFRYDHLRKEAS-EYEPYEPDRAAEPWRAALDEELTAYVA 454
           F+PR+  S  YD  ++E S E   +E       W+   DEE T   A
Sbjct: 166 FEPRATDSRHYDRYKEEESNENYNWEHKETHIDWQPE-DEECTEATA 211


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +3

Query: 684 KELSSLVLPGN 716
           K++SSL++PGN
Sbjct: 50  KQISSLIIPGN 60


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 198 KVLVEPSLNTTRINSRPYVSKAPSCIHSSPTTTN 299
           K+L+ PS+  T    R  + ++P C   +P  TN
Sbjct: 188 KLLIGPSIRITPAKKRIKLEQSPLC-PPAPRLTN 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,720
Number of Sequences: 438
Number of extensions: 4770
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)