Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_O02
(942 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0059 - 394001-394708 33 0.44
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 2.3
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 3.1
01_01_0070 - 542603-542686,542803-543441 30 3.1
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 4.1
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 29 4.1
05_01_0142 - 940421-940701,941262-941574 29 5.4
11_01_0625 + 5030571-5031016,5031333-5031627 29 7.1
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 7.1
02_05_0686 - 30900748-30902167,30903442-30904742 29 7.1
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.4
06_01_0486 - 3455030-3455770 28 9.4
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 28 9.4
>08_01_0059 - 394001-394708
Length = 235
Score = 32.7 bits (71), Expect = 0.44
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +3
Query: 747 PPRXGSPXPGVXXXPPXXGXXXXNPPFXPXPGXPXPGXXSXXXPXRXXXXXXPXGXPXLX 926
PPR P P PP +PP P P P P + P P P
Sbjct: 6 PPRRAPPPPATPPPPPRRAPPPPSPPIRPPP-PPTPRPYAPPPPSHPLAPPPPHISPPAP 64
Query: 927 VXXP 938
V P
Sbjct: 65 VPPP 68
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/67 (26%), Positives = 21/67 (31%)
Frame = +2
Query: 623 PLEAPSCASCSDPAXYRIPVRPXXLXXXXPXXGKPXXLXXXPPPVGFXPXXGXXXPPXPG 802
PL P+ + + P P RP P P PPP P PP P
Sbjct: 61 PLPTPTVTTPTPPPPPPAP-RPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPA 119
Query: 803 GXXPKPP 823
P P
Sbjct: 120 PAPPPTP 126
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +2
Query: 623 PLEAPSCASCSDPAXYRIPVRPXXLXXXXPXXGKPXXLXXXPPPVGFXP 769
P APS + + A P RP P GKP PPP G P
Sbjct: 904 PPPAPSATANTASALSPPPPRPPGAPPPPPPPGKPGGPPPPPPPPGSLP 952
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.9 bits (64), Expect = 3.1
Identities = 29/143 (20%), Positives = 36/143 (25%), Gaps = 1/143 (0%)
Frame = +3
Query: 513 RCWRFSIGSAPLTSITKIDAQVRGGEXDRTIKIPGVSPWKLPRAPPVPTLPX-TGYLXXL 689
R WR + A L ++ A + P P ++PP P P T
Sbjct: 5 RQWRRGLALAALLALHLALAAAQSPAAAPAQPTPTPVPTAPAKSPPAPATPAPTATPTPP 64
Query: 690 XXXXXXXPFXXSRGXFXXXPPRXGSPXPGVXXXPPXXGXXXXNPPFXPXPGXPXPGXXSX 869
P + PP P PP PP P P P P
Sbjct: 65 VAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPPATPPPALPPS 124
Query: 870 XXPXRXXXXXXPXGXPXLXVXXP 938
P P P P
Sbjct: 125 TPPPVAAPAEAPAALPPATTPPP 147
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 4.1
Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +2
Query: 623 PLEAPSCASCSDPAXY-RIPVRPXXLXXXXPXXGKPXXLXXXPPPVGFXPXXGXXXPPXP 799
P ++P C P+ P P L P P L PPP P PP P
Sbjct: 1150 PSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIP 1209
Query: 800 GGXXPKPP 823
P P
Sbjct: 1210 PPPVPSSP 1217
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 635 ELPGGNAWYLYSPVGFATSDLSVDFCDARQGGGAYG 528
EL G W + + VG +L++D CDARQ YG
Sbjct: 336 ELQMGRKWVVENQVG--KKNLAIDDCDARQSVYVYG 369
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 710 PXXGKPXXLXXXPPPVGFXPXXGXXXPPXPGGXXPK 817
P G P PPP G P PP PG P+
Sbjct: 36 PPQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQ 71
>11_01_0625 + 5030571-5031016,5031333-5031627
Length = 246
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 585 GEXDRTIKIPGVSPWKLPRAPPVPTLPXTGY 677
G T P W LP PP P+LP T +
Sbjct: 76 GTVAATEDAPAAVTWTLPPLPPCPSLPPTSW 106
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 7.1
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 348 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 503
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Frame = +2
Query: 677 PVRPXXLXXXXPXXGKPXXLXXXPPPVG---FXPXXGXXXPPXPGGXXPKPP 823
P P P P PPP G P G PP P G P PP
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 297 NESAN---ARGEAVCVLGALPLPRSLTRCAR 380
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.3 bits (60), Expect = 9.4
Identities = 23/98 (23%), Positives = 27/98 (27%)
Frame = +2
Query: 530 HRLRPPDEHHKNXXXXXXXXXXXDYKDTRRFPLEAPSCASCSDPAXYRIPVRPXXLXXXX 709
H +PP+ HH + T P P+ P Y P P
Sbjct: 53 HHGKPPEHHHHHKPPPSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYV 112
Query: 710 PXXGKPXXLXXXPPPVGFXPXXGXXXPPXPGGXXPKPP 823
P P PPP P PP P P P
Sbjct: 113 PPYIPPPTPPYVPPPTPPSPPP-YVPPPTPPSPPPYVP 149
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 747 PPRXGSPXPGVXXXPPXXGXXXXNPPFXPXPGXPXP 854
P G P P PP G NPP P PG P
Sbjct: 433 PVPWGQPPPYASYPPPPPGSSMYNPP-PPAPGQATP 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,219,550
Number of Sequences: 37544
Number of extensions: 484572
Number of successful extensions: 1434
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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