Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_O02
(942 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.90
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.90
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.90
Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class ho... 29 3.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.90
Identities = 21/63 (33%), Positives = 23/63 (36%)
Frame = +2
Query: 626 LEAPSCASCSDPAXYRIPVRPXXLXXXXPXXGKPXXLXXXPPPVGFXPXXGXXXPPXPGG 805
L APS ++ A I P P G P PPP G P G PP P G
Sbjct: 693 LSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPP---PPPPGGLPPITGGPPPPPPPG 749
Query: 806 XXP 814
P
Sbjct: 750 GLP 752
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/82 (29%), Positives = 27/82 (32%)
Frame = +3
Query: 609 IPGVSPWKLPRAPPVPTLPXTGYLXXLXXXXXXXPFXXSRGXFXXXPPRXGSPXPGVXXX 788
+P ++ P PP P TG P S G PP G P P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPI--SGGPPPPPPPPGGCPPP---PP 773
Query: 789 PPXXGXXXXNPPFXPXPGXPXP 854
PP G PP P PG P
Sbjct: 774 PPPPGGFKGGPPPPPPPGMFAP 795
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 730 GPXXXPPPGXVXPXXGXGXXPPXXG 804
GP PPPG + P G PP G
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPG 749
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.90
Identities = 21/63 (33%), Positives = 23/63 (36%)
Frame = +2
Query: 626 LEAPSCASCSDPAXYRIPVRPXXLXXXXPXXGKPXXLXXXPPPVGFXPXXGXXXPPXPGG 805
L APS ++ A I P P G P PPP G P G PP P G
Sbjct: 693 LSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPP---PPPPGGLPPITGGPPPPPPPG 749
Query: 806 XXP 814
P
Sbjct: 750 GLP 752
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/82 (29%), Positives = 27/82 (32%)
Frame = +3
Query: 609 IPGVSPWKLPRAPPVPTLPXTGYLXXLXXXXXXXPFXXSRGXFXXXPPRXGSPXPGVXXX 788
+P ++ P PP P TG P S G PP G P P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPI--SGGPPPPPPPPGGCPPP---PP 773
Query: 789 PPXXGXXXXNPPFXPXPGXPXP 854
PP G PP P PG P
Sbjct: 774 PPPPGGFKGGPPPPPPPGMFAP 795
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 730 GPXXXPPPGXVXPXXGXGXXPPXXG 804
GP PPPG + P G PP G
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPG 749
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.90
Identities = 21/63 (33%), Positives = 23/63 (36%)
Frame = +2
Query: 626 LEAPSCASCSDPAXYRIPVRPXXLXXXXPXXGKPXXLXXXPPPVGFXPXXGXXXPPXPGG 805
L APS ++ A I P P G P PPP G P G PP P G
Sbjct: 276 LSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPP---PPPPGGLPPITGGPPPPPPPG 332
Query: 806 XXP 814
P
Sbjct: 333 GLP 335
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/82 (29%), Positives = 27/82 (32%)
Frame = +3
Query: 609 IPGVSPWKLPRAPPVPTLPXTGYLXXLXXXXXXXPFXXSRGXFXXXPPRXGSPXPGVXXX 788
+P ++ P PP P TG P S G PP G P P
Sbjct: 302 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPI--SGGPPPPPPPPGGCPPP---PP 356
Query: 789 PPXXGXXXXNPPFXPXPGXPXP 854
PP G PP P PG P
Sbjct: 357 PPPPGGFKGGPPPPPPPGMFAP 378
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 730 GPXXXPPPGXVXPXXGXGXXPPXXG 804
GP PPPG + P G PP G
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPPPG 332
>Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical
protein F55B12.1 protein.
Length = 299
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Frame = +3
Query: 438 QNQGITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQV------RGGEX 593
+ GI +E++ E SKR P +FS+ S +PL S+ ++ Q+ + G
Sbjct: 19 EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76
Query: 594 DRTIKIPGVSPWKLPRAP 647
+PG P+ R P
Sbjct: 77 GTNAGVPGAFPYGPGRLP 94
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 722 KPXXLXXXPPPVGFXPXXGXXXPPXPGGXXPKPPV 826
KP P P GF P PP PGG P PP+
Sbjct: 60 KPSFFIPPPVPNGFIPP-----PPGPGGIPPPPPM 89
>AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class
homeodomain protein protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Frame = +3
Query: 438 QNQGITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQV------RGGEX 593
+ GI +E++ E SKR P +FS+ S +PL S+ ++ Q+ + G
Sbjct: 19 EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76
Query: 594 DRTIKIPGVSPWKLPRAP 647
+PG P+ R P
Sbjct: 77 GTNAGVPGEFPYGPGRLP 94
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 747 PPRXGSPXPGVXXXPPXXGXXXXNPPFXPXPGXPXP 854
PPR GSP P PP PP P G P P
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGGSPPP--PRAGSPPP 299
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 747 PPRXGSPXPGVXXXPPXXGXXXXNPPFXPXPGXPXP 854
PPR GSP P PP PP P G P P
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGGSPPP--PRAGSPPP 320
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 747 PPRXGSPXPGVXXXPPXXGXXXXNPPFXPXPGXPXP 854
PPR GSP P PP PP P G P P
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGGSPPP--PRAGSPPP 305
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/59 (33%), Positives = 20/59 (33%)
Frame = -1
Query: 846 GPPXXX*TGGXGXXPPGXGGXXXPXXGXNPTGGGXXXRXXGXPXXGXXXXRXXGRTGIR 670
GPP GG G PPG G P P G G P G R TG R
Sbjct: 424 GPPQGG-PGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAP-GGNPFARGPSATGYR 480
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,837,406
Number of Sequences: 27780
Number of extensions: 384025
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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