Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O01
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    29   0.90 
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    29   1.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.8  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    27   4.8  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   6.4  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   6.4  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   8.4  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    26   8.4  

>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query: 518  STLDPDTSL-MILHGNEKWVPNMPKCQVSLDQTDDIALGDKEQVASL 655
            +T++  T+L ++LHG+EK++ +    Q+++D +D I  G     ASL
Sbjct: 1066 NTINSFTNLSLMLHGSEKFIQSQKCLQIAVDLSDKI-FGKTTPTASL 1111


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 303 FYVQYINKKTWKTTLTNHIK 362
           F ++++NKK W T L+N IK
Sbjct: 348 FTMKFVNKKNWATVLSNGIK 367


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 264 LFLLCNRNK*TIFFYVQYINKKTWKTTLTNHIKFAMLIAKRRKELSRCRL 413
           L LLC   K   +F   ++N    K  LT H    +L+ K+   ++ C L
Sbjct: 199 LALLCKTQKGDPYF--SFLNAVLMKCVLTQHTLDVLLLTKKDSSMTLCSL 246


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/54 (18%), Positives = 30/54 (55%)
 Frame = +2

Query: 455  SENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNEKWVPNMPKCQVSLDQTD 616
            +  + +++++ GT++  EE+F   +   SL +    E ++ ++ K + S+ + +
Sbjct: 883  TNEIDLLIQASGTDLSTEEFFKRNENQDSLELRITKEDFLTSLKKLRPSISEQE 936


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 702 LQATRWDIGYAAVDQTRLATCSLSPK 625
           L A RW IGY + +     +CS+S +
Sbjct: 87  LLAARWTIGYLSWESMNSVSCSISKR 112


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 238 FLGNRDFIICFYFVIEISK--QSSFTFSIL 321
           +LG   ++I +YF ++ISK   +S TF +L
Sbjct: 341 YLGPFSYLILYYFFLDISKLQMTSLTFFLL 370


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 145 ANSTLDFFVCWQLPKGFRQEKYNSSTLXQT 234
           ++ T+D  V W    G R++KY SS   QT
Sbjct: 320 SSRTMDDVVRWLFSSGKRRQKYESSYPYQT 349


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 326 KNMENDINKPYKICDVNREKKKGIVAMSLEDLLIKV 433
           K  E  + K Y IC  +  K+      SLE+LL+K+
Sbjct: 67  KEREEHLEKIYVICTRHYAKRISENVASLEELLLKI 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,829
Number of Sequences: 5004
Number of extensions: 72074
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)