Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O01
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353...    30   2.2  
03_06_0639 - 35227780-35227813,35227963-35228099,35228505-35229449     29   3.8  
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558...    29   6.7  
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304...    28   8.8  

>03_05_1071 +
           30133696-30133874,30134294-30135200,30135224-30135358,
           30135545-30136553,30136699-30136703
          Length = 744

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 452 PSENLTVVLESDGTEVDDEEYFSTLDPDTSLM 547
           PS  L ++ ESDG  V DEE F  LD +T ++
Sbjct: 656 PSSQLNLIPESDGLTVSDEE-FDGLDEETIMV 686


>03_06_0639 - 35227780-35227813,35227963-35228099,35228505-35229449
          Length = 371

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 416 DLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNE 565
           D+LIK P  + +P  ++  ++ESDG ++      S L PD   +  HG E
Sbjct: 80  DVLIKNPNPVPIPLVDIDYLIESDGRKL-----VSGLIPDAGTIHAHGEE 124


>10_02_0129 +
           5584585-5584732,5586567-5586968,5587038-5587106,
           5587181-5587234,5587309-5588214,5588313-5590283,
           5590833-5591235,5591845-5591857
          Length = 1321

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 458 ENLTVVLESDGTEVDDEEYFSTLDP-DTSLMILHGNEKWVPNMPKCQVSLD 607
           E   V+  ++ T+ + + Y+   DP    L    G   W P +PK  VS+D
Sbjct: 463 ERSVVLYGNNNTKYNIQSYYGCYDPLSYPLFFPKGELGWHPEIPKVGVSID 513


>09_04_0609 -
           18929600-18929646,18929753-18929924,18930304-18930498,
           18930691-18930801,18930885-18931097,18931643-18931720,
           18931894-18932001,18932175-18932316,18932413-18933761,
           18934492-18935121
          Length = 1014

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 383 KKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEE 511
           ++ G    ++E  L+ +    G PS NL  +L + GTE ++ E
Sbjct: 61  ERSGSAPPTMEGSLVALGHLTGQPSGNLGAILPNLGTEANNSE 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,752,269
Number of Sequences: 37544
Number of extensions: 422289
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)