Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O01
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    29   0.077
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   3.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   5.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   5.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   5.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 0.077
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 729 YQITIXGLGLQATRWDIGYAAVDQTRLATCSLSP 628
           Y+I   GL   ATR+D+G  A   T +A C   P
Sbjct: 441 YEIPAHGLPPSATRYDLGAVATVGTTVAPCFEEP 474


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 170 TKKSRVEFATSLITDEKRLGTRKSKSHT 87
           TKK  +E+    I + ++LG+ +SKS +
Sbjct: 57  TKKMILEYELRRIREIEKLGSERSKSRS 84


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +1

Query: 625 FG**RTSGESCLVDCSITYVPSRCLEAKTXNCYLIWILTAWLTLV 759
           FG  R   E  +  C   Y     L A    CY IW+    L L+
Sbjct: 188 FGWNRYVPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFLI 232


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 127 SVIKEVANSTLDFFVCW 177
           SVIK ++   + FF+CW
Sbjct: 267 SVIKMLSAVVILFFICW 283


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +1

Query: 625 FG**RTSGESCLVDCSITYVPSRCLEAKTXNCYLIWILTAWLTLV 759
           FG  R   E  +  C   Y     L A    CY IW+    L L+
Sbjct: 64  FGWNRYVPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFLI 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,566
Number of Sequences: 438
Number of extensions: 4846
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)