Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N23
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.70 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.93 

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 623 PXSXXXPXPVPXLPXPXTCPPXPFRETXXLSXYXPPXRXPXSGVGRPPQ-XGVVFXXPPL 799
           P +   P P    P P + PP P +     S   PP + P + V  PP    +    PP+
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQ-PAAPVKSPPSAPSLPSAVPPM 197

Query: 800 XP 805
            P
Sbjct: 198 PP 199



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
 Frame = +2

Query: 611 TGVPPXSXXXPXPVPXLPXPXTCPPXPFRETXXLSXYXP-PXRXP--XSGVGRPPQXGVV 781
           +  PP +   P P   L  P + PP P       +   P P + P   S +  P Q    
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180

Query: 782 FXXPPLXP 805
              PP  P
Sbjct: 181 VKSPPSAP 188


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 19/74 (25%), Positives = 27/74 (36%)
 Frame = +2

Query: 545  PLTXLPKIHXQFKVAXPTGX*NTGVPPXSXXXPXPVPXLPXPXTCPPXPFRETXXLSXYX 724
            PL  +P +      A P    +   PP     P   P +P P + PP P + +       
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPV--PSTAPPVPIPTSTPPVP-KSSSGAPSAP 1063

Query: 725  PPXRXPXSGVGRPP 766
            PP   P S +   P
Sbjct: 1064 PPVPAPSSEIPSIP 1077



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +2

Query: 617  VPPXSXXXPXPVPXLPXPXTCPPXPFRETXXLSXYXPPXRXPXSGVGRPPQXGVVFXXPP 796
            VP  S   P P P +  P    P         S   PP   P SG+  PP        PP
Sbjct: 1133 VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI--PPVPKPAAGVPP 1190

Query: 797  LXP 805
            + P
Sbjct: 1191 VPP 1193



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
 Frame = +2

Query: 560  PKIHXQFKVAXPTGX*NTGVPPXSXXXPXPVPXLPXPXTCPPXPFRETXXLSXYXPPXR- 736
            P +      A P    ++G+PP        VP +P P   PP P + +  +    PP   
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAG-VPPVPPPSEAPPVP-KPSVGVPPVPPPSTA 1216

Query: 737  --XPXSGVGRPPQXGVVFXXPPL 799
               P    G PP        PP+
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPV 1239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,035
Number of Sequences: 5004
Number of extensions: 33615
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)