Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_N22
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.033
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.044
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.058
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.95
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.95
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.033
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = -2
Query: 407 PPPPX---PPPXPXRXPXPLXGFXXGGPP-PHPXXXXXGXGCPP 288
PPPP P P P P P GGPP P P G G PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Frame = -2
Query: 404 PPPXPPPXPXRX----PXPLXGFXXGGPPPHP 321
P P PPP P P P G GPPP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.044
Identities = 23/78 (29%), Positives = 23/78 (29%)
Frame = -2
Query: 407 PPPPXPPPXPXRXPXPLXGFXXGGPPPHPXXXXXGXGCPPLVGGXXXGGXXXXXXXXXPX 228
PPPP P R P PL PP P G P L G P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL---PPLGNASRTSTPPVPT 419
Query: 227 XGXGPPXGGXXXPPGXPP 174
PP PP PP
Sbjct: 420 PPSLPPSAPPSLPPSAPP 437
Score = 29.5 bits (63), Expect = 0.72
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 407 PPPPXPPPXPXRXPXPLXGFXXGGPPPHPXXXXXGXGCPP 288
PPPP PP PL PPP P G P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = -2
Query: 407 PPPPXPPPXPXRXPXPLXGFXXGG--PPPHPXXXXXGXGCPPL 285
PPPP PP R P+ PPP P G PL
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL 353
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Frame = +1
Query: 514 PPPRXXGRAXXXTXAPPXKQXTXKPPRPESXXPXKKTPP----XKGPXXPXPPPXQTP 675
PPP A PP + PP P S + PP + P PP P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 27.1 bits (57), Expect(2) = 0.83
Identities = 22/78 (28%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Frame = -2
Query: 401 PPXPPPXPXRXPXPLXGFXXGGPPPHPXXXXXGXGCPPLVGGXXXGG-XXXXXXXXXPXX 225
PP PPP R PPP P G PP+ G
Sbjct: 290 PPLPPPSS-RVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA 348
Query: 224 GXGP-PXGGXXXPPGXPP 174
G P P G PP PP
Sbjct: 349 GSIPLPPQGRSAPPPPPP 366
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/54 (27%), Positives = 16/54 (29%)
Frame = +1
Query: 514 PPPRXXGRAXXXTXAPPXKQXTXKPPRPESXXPXKKTPPXKGPXXPXPPPXQTP 675
PPP GR+ T PP P PP P P P P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Frame = -2
Query: 401 PPXPPPXPX-RXPXPLXGFXXGGPPPHPXXXXXGXGCPP 288
PP PP P R P + PPP P PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 846 RTXXXPXXTPXXLNPPPXXXPXPPPEXPP 932
RT P TP L PP P PP PP
Sbjct: 411 RTSTPPVPTPPSL--PPSAPPSLPPSAPP 437
Score = 20.6 bits (41), Expect(2) = 0.83
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -2
Query: 404 PPPXPPP 384
PPP PPP
Sbjct: 253 PPPIPPP 259
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.058
Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +1
Query: 484 GEITXHPRXDPPPRXXGRAXXXTXAPPXKQXTXKPPRPESXXPXKKTPP-XKGPXXPXPP 660
G HP PP R + APP PP P S P PP GP PP
Sbjct: 1680 GMAPAHPVSTPPVRPQ------SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Query: 661 P 663
P
Sbjct: 1734 P 1734
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 407 PPPPXPPPXPXRXPXPLXGFXXGGPPPHP 321
PPPP P P P G PPP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 888 PPPXXXPXPPPEXPPXP 938
PPP PPP PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMP 1724
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 0.95
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 861 PXXTPXXLNPPPXXXPXPPPEXPP 932
P TP +P P P PPP PP
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPP 248
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = +1
Query: 484 GEITXHPRXDPPPRXXGRAXXXTXAPPXKQXTXKPPRPESXXPXKKTP 627
GE P P P A A P K+ K P P + P TP
Sbjct: 883 GEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATRPKSTTP 930
Score = 23.4 bits (48), Expect(2) = 6.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 407 PPPPXPPP 384
PPPP PPP
Sbjct: 190 PPPPPPPP 197
Score = 21.0 bits (42), Expect(2) = 6.0
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -2
Query: 404 PPPXPPPXPXRXP 366
P P PPP P P
Sbjct: 236 PAPPPPPPPTLPP 248
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.95
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +1
Query: 502 PRXDPPPRXXGRAXXXTXAPPXKQXTXKPPRPESXXPXKKTPPXKGPXXP--XPPPXQ 669
P PP T APP + + PP P S P P K P P PPP Q
Sbjct: 125 PSAPAPPTPQSELRPPTSAPP--RPSIPPPSPASAPPI----PSKAPPIPSSLPPPAQ 176
Score = 26.2 bits (55), Expect = 6.7
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Frame = +1
Query: 514 PPPRXXGRAXXXTXAPPXKQXTXKPPRPESXXPXKKTP---------PXKGPXXPXPPPX 666
PPP + APP P +P + P K P P P P PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAA--PVKSPPSAPSLPSAVPPMPPKVPPPPLS 207
Query: 667 QTPXXXTN 690
Q P T+
Sbjct: 208 QAPVANTS 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,293
Number of Sequences: 5004
Number of extensions: 27976
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -