Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_N21
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 225 9e-60
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 97 4e-21
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 57 3e-09
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 43 5e-05
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 42 1e-04
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 33 0.074
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 29 1.2
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 28 2.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 2.8
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 27 3.7
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 8.5
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 8.5
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 225 bits (549), Expect = 9e-60
Identities = 111/186 (59%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
Frame = +2
Query: 236 ALVNVPPTKLTVLDNGLRIATEDSG-AATATVGLWIDAGSRYETSKNNGVAHFLEHMAFK 412
A +P T+ T L NGL +ATE A TATV + +DAGSR ET+KNNG AHFLEH+AFK
Sbjct: 15 ATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFK 74
Query: 413 GTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEP 592
GT RSQ LEL EN GAHLNAYTSREQTV+YA N VP AV +LADI+ NSS++
Sbjct: 75 GTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISAS 134
Query: 593 EIERERGVILREMQDVESNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSY 772
+ERER VILRE ++V+ EVVFDHLHATA+QG PLG+TILGP +NI+ +++ DL Y
Sbjct: 135 AVERERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQY 194
Query: 773 XRNXYQ 790
++ Y+
Sbjct: 195 IKDNYR 200
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 96.7 bits (230), Expect = 4e-21
Identities = 47/174 (27%), Positives = 91/174 (52%)
Frame = +2
Query: 272 LDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELL 451
L NG+ + + +G+++ AGSRYET K +GV+HF++ +AF+ T + +++
Sbjct: 51 LKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAK 110
Query: 452 VENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILREM 631
+EN+G + TSRE ++ A +DV ++LA+ + + E ++ R I+ E
Sbjct: 111 LENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYEN 170
Query: 632 QDVESNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSYXRNXYQP 793
++ + ++ + H TAFQ LG +L + I+ ++ Y + Y+P
Sbjct: 171 SELWTKPDALLGEFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRP 224
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 57.2 bits (132), Expect = 3e-09
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Frame = +2
Query: 281 GLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVEN 460
G+ A ++ AT ++ + I+AGSRY+ GV+H LE AFK T +RS + E
Sbjct: 30 GVSFAGRETPTATGSLSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESEL 87
Query: 461 MGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILR-EMQD 637
+G L+ +RE + A+ L + +LA+++ + ++ E R E +
Sbjct: 88 LGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESEL 147
Query: 638 VESNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISK 754
++ V LH AF +G + P IS+
Sbjct: 148 FREDILRVAMAKLHEKAFH-RGIGNEVYLPASASPSISE 185
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 43.2 bits (97), Expect = 5e-05
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Frame = +2
Query: 260 KLTVLDNGLRIA-TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQ 433
+L L+N L + D A+ + + GS+ + G+AHF EH+ F GT K +
Sbjct: 25 RLIKLENDLEVLLVRDPETDNASAAIDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYPDE 84
Query: 434 TDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERE-R 610
+ +E+ NAYT+ T +Y + + + A++ A + E +RE R
Sbjct: 85 NEYRKYLESHNGISNAYTASNNTNYYFEVSHDALYGALDRFAQFFIDPLFLEECKDREIR 144
Query: 611 GVILREMQDVESN 649
V ++++S+
Sbjct: 145 AVDSEHCKNLQSD 157
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 41.9 bits (94), Expect = 1e-04
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 13/158 (8%)
Frame = +2
Query: 359 ETSKNNGVAHFLEHMAFKGTSKRSQTD-LELLVENMGAHLNAYTSREQTVFYAKCLAND- 532
E N G H LEH+ F G+ K L +NA T + T + D
Sbjct: 52 EAHDNLGCPHTLEHLCFMGSKKYPMNGILTKFAGRACGDINACTDVDYTSYELSAAEEDG 111
Query: 533 ----VPV-AVEILADIIQNSSLAEPEIE-----RERGVILREMQDVESNLQEVVFDHLHA 682
+PV A IL+ I+ + + E GV+ EMQ+ +S+ +V+FD +
Sbjct: 112 FLRLLPVFADHILSPILSDEAFCTEVYHINGMGEESGVVYSEMQNTQSSETDVMFDCMRT 171
Query: 683 TAFQGTP-LGQTILGPTKNIKKISKADLQSYXRNXYQP 793
+ + T G ++K+S ++ Y + Y P
Sbjct: 172 SQYPVTSGYYYETGGHPSELRKLSIEKIREYHKEMYVP 209
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 32.7 bits (71), Expect = 0.074
Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 21/170 (12%)
Frame = +2
Query: 347 GSRYETSKNNGVAHFLEHMAFKGTSKRSQTD--LELLVENMGAHLNAYTSREQTVF-YAK 517
G + + G+ H LEH G++K D ++L ++ +NA+T+ + T + +A
Sbjct: 78 GFQTPAENDEGIPHILEHTTLCGSNKYPVRDPFFKMLNRSLATFMNAFTASDFTFYPFAT 137
Query: 518 CLANDVPVAVEILADIIQNSSLAEPEIERE------------------RGVILREMQDVE 643
D ++ D L + + +E GV+ EM+
Sbjct: 138 VNTTDYKNLRDVYLDATLFPKLRKLDFLQEGWRFEHADVNDKKSPIIFNGVVYNEMKGQV 197
Query: 644 SNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSYXRNXYQP 793
S+ + + FQGT G G I + +L + R+ Y P
Sbjct: 198 SDSSYIFYMLFQQHLFQGTAYGFNSGGDPLAIPDLKYEELVKFHRSHYHP 247
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 730 GRSKNCLTQWGTLECCCVKVIKHNLLKVTFDILHFAKNDTAFSF 599
GRS C +WG L+ C + N LKVT + F N+ +F
Sbjct: 2146 GRSFACKKRWGFLQMPCT---RENFLKVTLQV--FKSNEDTCNF 2184
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 619 NDTAFSFDFGFGEGGILYDISKDLYCYG 536
N F +F G+ G+ YDI + L YG
Sbjct: 641 NRNIFHIEFDLGDSGLTYDIGEALGVYG 668
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 383 AHFLEHMAFKGTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAV-EILA 559
A+F + +G+ S T L V N + ++ RE+ VF + PV++ + +
Sbjct: 430 AYFSKSRYVEGSGSMSTTPLATSVNNSYKLPSGFSVREEAVFSSPTTEGSRPVSLARLKS 489
Query: 560 DIIQNSSLAEPE 595
+ I S A PE
Sbjct: 490 EPIFRSDTASPE 501
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 462 WVHT*TPTRPGNKQFFTQNASLMTSP 539
W H TPT P + Q T N+SL P
Sbjct: 361 WNHCATPTIPVSLQVLTPNSSLKVDP 386
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 669 ITFTQQHSKVPHWVKQFLD--LPKILRKSLRLTYRATLGTXINPGPFCFVLDLVE 827
+TF +++ P ++ F+D L K RK++ + ATL + F D+ E
Sbjct: 412 VTFVDGYTRAPEYISLFIDDNLKKDARKAIEGSIEATLQNSVTLFRFISEKDVFE 466
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 8.5
Identities = 23/107 (21%), Positives = 43/107 (40%)
Frame = +2
Query: 296 TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVENMGAHL 475
T+ SG +GLW+ Y+ SK + + F+ + LEL + M
Sbjct: 280 TQGSGIFLTAIGLWL-----YDRSKKGNLYESCKVKEFEKDA------LELEEQTMEDEK 328
Query: 476 NAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGV 616
+ +S Q+ FY K + ++ + +I +S + + GV
Sbjct: 329 SYPSSGTQSPFYGKNFLPQITPRLDSVVPLISDSPMTPNSVYSNEGV 375
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 28 RESLRF-CSVAFDSCEELLPIHYVNRQGKNILTHS 129
R S+R C A C +LLP + +NR N++ HS
Sbjct: 286 RASIRIVCVTALYDCCQLLPTYLINR---NLIRHS 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,450,505
Number of Sequences: 5004
Number of extensions: 71077
Number of successful extensions: 197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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