Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N18
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    28   1.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   4.9  

>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +2

Query: 245  LRNQLAEDGCAESQVVLAXQLLEEKCELEADKISNFKQALEWLICATEQAH 397
            L N LA+  C E+  +L+  + +EK E+E     + ++  E ++   E+ +
Sbjct: 1062 LENSLADFSCEETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVN 1112


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 752  FHYCLCDRRXVGQMVLMXVRHRXXH 678
            FHYC C +   G M+   + H   H
Sbjct: 1171 FHYCFCRQPEAGMMIECELCHEWYH 1195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,546
Number of Sequences: 5004
Number of extensions: 52410
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)