Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N18
         (915 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3208|AAN13917.2|  853|Drosophila melanogaster CG4917-PA...    97   4e-20
AE014297-3209|AAF56041.3|  872|Drosophila melanogaster CG4917-PB...    85   1e-16

>AE014297-3208|AAN13917.2|  853|Drosophila melanogaster CG4917-PA,
           isoform A protein.
          Length = 853

 Score = 96.7 bits (230), Expect = 4e-20
 Identities = 56/139 (40%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
 Frame = +2

Query: 200 RKRWNLHGPQGSLRRLRNQLAEDGCAESQVVLAXQLLEEKC-ELEADKISNFKQALEWLI 376
           R+RWNL   + SL +L++ +AE+GC + Q  LA +LL+    E    K +  ++A+ WL+
Sbjct: 15  RRRWNLED-RASLNKLKHHIAEEGCPQMQYDLAKELLDNSIVEPNLAKGNQSQKAVNWLV 73

Query: 377 CATEQAHPEARRLLRRCIRSGV-IDXDSAAIVRAKSCLAASXQETVAXKAAXDLFASLSN 553
            A    H +A +LLR+C   G  I  ++   VR   CLA +  E  A KAA +LFA LSN
Sbjct: 74  SAAHNGHEDAVKLLRQCYNDGSGITAENTDEVRR--CLAMTPGERAARKAARELFACLSN 131

Query: 554 GEQYITTVQLERRIXXICN 610
           G ++IT  QLER++  I N
Sbjct: 132 GNEHITPKQLERKMRRIYN 150


>AE014297-3209|AAF56041.3|  872|Drosophila melanogaster CG4917-PB,
           isoform B protein.
          Length = 872

 Score = 85.4 bits (202), Expect = 1e-16
 Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 21/158 (13%)
 Frame = +2

Query: 200 RKRWNLHGPQGSLRRLRNQLAEDGCAESQVVLAXQLLEEKCELEADKISNFK-------- 355
           R+RWNL   + SL +L++ +AE+GC + Q  LA +LL+       D + N+K        
Sbjct: 15  RRRWNLED-RASLNKLKHHIAEEGCPQMQYDLAKELLDNSIGECKDLLENYKIMKIAMSA 73

Query: 356 ------------QALEWLICATEQAHPEARRLLRRCIRSGV-IDXDSAAIVRAKSCLAAS 496
                       +A+ WL+ A    H +A +LLR+C   G  I  ++   VR   CLA +
Sbjct: 74  VEPNLAKGNQSQKAVNWLVSAAHNGHEDAVKLLRQCYNDGSGITAENTDEVRR--CLAMT 131

Query: 497 XQETVAXKAAXDLFASLSNGEQYITTVQLERRIXXICN 610
             E  A KAA +LFA LSNG ++IT  QLER++  I N
Sbjct: 132 PGERAARKAARELFACLSNGNEHITPKQLERKMRRIYN 169


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,755,579
Number of Sequences: 53049
Number of extensions: 588070
Number of successful extensions: 955
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4484945457
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)