Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N18
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 147 FPINFIYPQ*LLYLKIVLFVCFD 79
           FP+ F+    LL+ +++ FVC D
Sbjct: 8   FPVLFVIINVLLHGQVICFVCKD 30


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +3

Query: 291 YWLXSFWKKNVSLR--LTRYQI 350
           ++L   WKKN++LR  +T+Y I
Sbjct: 88  FYLGKEWKKNLNLRDSVTKYLI 109


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 287 VVLAXQLLEEKCELEADKISNFKQALEWL 373
           VVL  +  + +  LEA + SN  Q  +WL
Sbjct: 200 VVLFTRAEDARGILEAARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 287 VVLAXQLLEEKCELEADKISNFKQALEWL 373
           VVL  +  + +  LEA + SN  Q  +WL
Sbjct: 290 VVLFTRAEDARGILEAARRSNLSQPFQWL 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,264
Number of Sequences: 438
Number of extensions: 3501
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)