Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N16
         (949 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.009
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.009
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +1

Query: 211 PGPPXARXPPPXXGGLXXPPPPPXXXPPGXPGXAPPXGPP 330
           PGP  +    P       PP P    PPG P  APP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 26.6 bits (56), Expect = 0.33
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +1

Query: 220 PXARXPPPXXGGLXXPPPPPXXXPPGXPGXAPPXGPP 330
           P +  P P       P  P    PP      PP GPP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 26.6 bits (56), Expect = 0.33
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 835 PAPPPXXXXPPPXPAXXGGXXXPXXPPXPXXPPRXPP 945
           P P P     P  P   G    P   P P  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQR-GSPPNPSQGPPPGGPPGAPP 56



 Score = 25.8 bits (54), Expect = 0.57
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +1

Query: 118 PFXGPXGPPXXPRXGGPPPPXXGXXGXWAXXPGPPXARXP 237
           P   P   P  P+ G PP P  G        PG P ++ P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP--GGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.0
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = +2

Query: 839 PPPPXXXXPXPXPPXPGGXGXPXXXPXPXXPP-APP 943
           P P       P  P  G    P   P P  PP APP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 538 PPPXRXPXXPPXGXPPPXXPGXXXXXPP 621
           P P + P  P  G PP    G     PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
 Frame = +2

Query: 671 PPXXGGGXPPPPXXGGXGXXPPXP--PXXPPPXP 766
           PP  G   PP P        PP P  P   P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +1

Query: 721 GAXAPXPPXXXPPXPXXXAPPXAAPPPPXXXXXXXXXPPAPP 846
           GA  P P     P     AP   +PP P         P APP
Sbjct: 19  GAPGPQPSPHQSPQ----APQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +2

Query: 476 PPPGGGXXXXXXXXPXXXXXPPPPXGPPXXPXXXXP 583
           P P           P      PPP GPP  P    P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -1

Query: 256 APPXXGGGXGPXGXPGXXPXPXP 188
           +PP    G  P G PG  P   P
Sbjct: 38  SPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 638 GPXXXGXXPPPPPXXGGGXPPPPXXGGXGXXPPXPPXXPP 757
           GP       P  P  G   PP P     G  P  PP  PP
Sbjct: 22  GPQPSPHQSPQAPQRGS--PPNP---SQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +2

Query: 518 PXXXXXPPPPXGPPXXPXXXXPPPXPPAXXXXXP 619
           P     P P  GPP       PP   P+     P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 252  GAXXPPPPPP 281
            G+  PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 833 PPPPPPXXXXP 865
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 778 PPXAAPPPP 804
           PP  APPPP
Sbjct: 338 PPKPAPPPP 346


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 662 PPPPPXXGG 688
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.161    0.613 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 324,929
Number of Sequences: 438
Number of extensions: 18881
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)