Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N15
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   183   4e-47
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   183   4e-47
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   6.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  183 bits (445), Expect = 4e-47
 Identities = 84/129 (65%), Positives = 93/129 (72%)
 Frame = +3

Query: 198 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 377
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 378 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 557
           THRSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH 
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHR 143

Query: 558 IEKIPELPL 584
           IE+IPE+PL
Sbjct: 144 IEEIPEVPL 152



 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = +1

Query: 559 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGXGKCATVVVSS 738
           ++  P  P VV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAG GK        
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQ 203

Query: 739 VRAPHNL-HKDQGLTRAFRNIPGVELLNL 822
            R P  + ++D G+ +AFRNIPGVE++N+
Sbjct: 204 RRGPLVVFNEDTGIVKAFRNIPGVEIVNV 232


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  183 bits (445), Expect = 4e-47
 Identities = 84/129 (65%), Positives = 93/129 (72%)
 Frame = +3

Query: 198 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 377
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 378 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 557
           THRSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH 
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHR 143

Query: 558 IEKIPELPL 584
           IE+IPE+PL
Sbjct: 144 IEEIPEVPL 152



 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = +1

Query: 559 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGXGKCATVVVSS 738
           ++  P  P VV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAG GK        
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQ 203

Query: 739 VRAPHNL-HKDQGLTRAFRNIPGVELLNL 822
            R P  + ++D G+ +AFRNIPGVE++N+
Sbjct: 204 RRGPLVVFNEDAGIVKAFRNIPGVEIVNV 232


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 200 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 295
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,875
Number of Sequences: 5004
Number of extensions: 62976
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)