Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N13
         (921 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   288   6e-78
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   288   6e-78
AE014296-1902|ABC66155.1|  158|Drosophila melanogaster CG34012-P...    31   2.2  

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  288 bits (707), Expect = 6e-78
 Identities = 135/196 (68%), Positives = 149/196 (76%)
 Frame = +3

Query: 108 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 287
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ   
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFV 60

Query: 288 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                              TYGKPKSHGVNQLKP R LQSIAEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYW 120

Query: 468 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 647
           +AQD+SYKYFEVIL+D  H AIRRDPKINWI   VHKHRE+RGLTSAG+SSRG+GKG+RY
Sbjct: 121 IAQDASYKYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGKGYRY 180

Query: 648 SQTKGGSRRAAWLXXN 695
           SQT GGSRRAAW   N
Sbjct: 181 SQTIGGSRRAAWKRKN 196


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  288 bits (707), Expect = 6e-78
 Identities = 135/196 (68%), Positives = 149/196 (76%)
 Frame = +3

Query: 108 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 287
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ   
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFV 60

Query: 288 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                              TYGKPKSHGVNQLKP R LQSIAEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYW 120

Query: 468 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 647
           +AQD+SYKYFEVIL+D  H AIRRDPKINWI   VHKHRE+RGLTSAG+SSRG+GKG+RY
Sbjct: 121 IAQDASYKYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGKGYRY 180

Query: 648 SQTKGGSRRAAWLXXN 695
           SQT GGSRRAAW   N
Sbjct: 181 SQTIGGSRRAAWKRKN 196


>AE014296-1902|ABC66155.1|  158|Drosophila melanogaster CG34012-PA
           protein.
          Length = 158

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -1

Query: 228 WERGAYESTDGTAIPSHATKNA*HRSVFSYTTPEYICRHPS*QPVADVSRVPQVNRKRKX 49
           W+ G +ES D   I  ++T +   + +      EY+C+HP  + +  V     +N K K 
Sbjct: 13  WDLGKWESRD---IKHYSTISRIQKQL-RLGNWEYLCQHPEIRAIIRVILHQALNGKPKP 68

Query: 48  QNLKEF 31
           +NL++F
Sbjct: 69  ENLRKF 74


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,637,093
Number of Sequences: 53049
Number of extensions: 715295
Number of successful extensions: 2111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2109
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4525903863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)