Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N12
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.076
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect(2) = 0.076
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 784  PPPPPPPXGG 813
            PPPPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 785  PPPPPPP 805
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 21.0 bits (42), Expect(2) = 0.076
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 655  PPPPPP 672
            PPPPPP
Sbjct: 1355 PPPPPP 1360


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 785 PPPPPPPXGG 814
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,446
Number of Sequences: 438
Number of extensions: 7110
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)