Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_N11
(907 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 163 2e-41
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 163 2e-41
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 29 0.69
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 29 1.2
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 3.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 6.4
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 8.5
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 163 bits (397), Expect = 2e-41
Identities = 78/160 (48%), Positives = 101/160 (63%)
Frame = +1
Query: 217 IVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 396
I Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+
Sbjct: 37 IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96
Query: 397 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTG 576
AAY+TG E +++GP F+ +LDVGL RT+TG
Sbjct: 97 AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156
Query: 577 ARVFGAMKGAVDGGLNVPHSIKRFPGYDAESXKFNAEVHR 696
+RVFGAMKGA DGGL +PHS RFPG+D E+ + + E R
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLR 196
Score = 62.5 bits (145), Expect = 8e-11
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +3
Query: 108 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 215
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRL 36
Score = 55.2 bits (127), Expect = 1e-08
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +2
Query: 701 HIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYXKAHEAIRAD 859
+I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ IR D
Sbjct: 198 YIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIRED 250
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 163 bits (397), Expect = 2e-41
Identities = 78/160 (48%), Positives = 101/160 (63%)
Frame = +1
Query: 217 IVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 396
I Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+
Sbjct: 37 IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96
Query: 397 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTG 576
AAY+TG E +++GP F+ +LDVGL RT+TG
Sbjct: 97 AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156
Query: 577 ARVFGAMKGAVDGGLNVPHSIKRFPGYDAESXKFNAEVHR 696
+RVFGAMKGA DGGL +PHS RFPG+D E+ + + E R
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLR 196
Score = 62.5 bits (145), Expect = 8e-11
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +3
Query: 108 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 215
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRL 36
Score = 55.2 bits (127), Expect = 1e-08
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +2
Query: 701 HIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYXKAHEAIRAD 859
+I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ IR D
Sbjct: 198 YIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIRED 250
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 29.5 bits (63), Expect = 0.69
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +1
Query: 40 DLIPFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGVVKGKLIIMLVNASI 219
D +PF+ +G S LR +IW SL+ T G SR + KL+ + N I
Sbjct: 982 DDLPFYCIGFKSAMPEYTLRTRIWASLRSQTLYRTISGFMNYSRAI---KLLYRVENPEI 1038
Query: 220 VQ 225
VQ
Sbjct: 1039 VQ 1040
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 28.7 bits (61), Expect = 1.2
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +1
Query: 40 DLIPFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGVVKGKLIIMLVNASI 219
D +PF+ +G + LR +IW SL+ T G SR + KL+ + N +
Sbjct: 958 DDLPFYCIGFKNATPEYTLRTRIWASLRSQTLYRTVSGFMNYSRAI---KLLYRVENPDV 1014
Query: 220 VQ-DKNKYNTPKYRLIVRLSNKDVTC--QVAYSRIEGDHI 330
Q + + + +Y L S K C Y++ D I
Sbjct: 1015 AQLFEGQMDVLEYELDRMASRKFKMCVSMQRYAKFTADEI 1054
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 439 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 347
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 46 IPFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGVVKGKLIIMLVNASIVQ 225
+PF+ +G S LR +IW SL+ T+ G SR + KL+ + +++
Sbjct: 898 LPFYCIGFKSTAPEYTLRTRIWASLRSQTLYRTASGMMNYSRAL---KLLYRVEQPNLLD 954
Query: 226 D 228
D
Sbjct: 955 D 955
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 46 IPFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 177
+PF+ +G S LR +IW SL+ T G SR +
Sbjct: 802 LPFYCVGFKSATPEYTLRTRIWASLRTQTLYRTINGFSNYSRAI 845
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,596,204
Number of Sequences: 5004
Number of extensions: 73406
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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