Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_N10
(980 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein. 41 0.001
AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock pr... 41 0.001
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.95
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.95
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.95
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.2
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.2
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 28 8.8
>L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein.
Length = 568
Score = 41.1 bits (92), Expect = 0.001
Identities = 35/109 (32%), Positives = 47/109 (43%)
Frame = +2
Query: 143 MLRXPRXXRQTGTLQKSXQLXXPXAKDVRLGADVRAXXQQGXDILPXAVAATXGPXXPET 322
MLR R QT ++ AKDV+ GA+ R G ++L AV+ T GP
Sbjct: 1 MLRLARKGLQTAVVRS-------YAKDVKFGAEGRQAMLVGVNLLADAVSVTMGPKGRNV 53
Query: 323 *XXNNPGGPXKXTKDGVTAXQRRGTQGXVPEXPXANXXQXAAXXTNDEA 469
+ G P K TKDGVT + + + A Q A N+EA
Sbjct: 54 IIEQSWGSP-KITKDGVTVAKSIDLKDKY-QNLGAKLIQDVANKANEEA 100
>AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock
protein protein 60 protein.
Length = 568
Score = 41.1 bits (92), Expect = 0.001
Identities = 35/109 (32%), Positives = 47/109 (43%)
Frame = +2
Query: 143 MLRXPRXXRQTGTLQKSXQLXXPXAKDVRLGADVRAXXQQGXDILPXAVAATXGPXXPET 322
MLR R QT ++ AKDV+ GA+ R G ++L AV+ T GP
Sbjct: 1 MLRLARKGLQTAVVRS-------YAKDVKFGAEGRQAMLVGVNLLADAVSVTMGPKGRNV 53
Query: 323 *XXNNPGGPXKXTKDGVTAXQRRGTQGXVPEXPXANXXQXAAXXTNDEA 469
+ G P K TKDGVT + + + A Q A N+EA
Sbjct: 54 IIEQSWGSP-KITKDGVTVAKSIDLKDKY-QNLGAKLIQDVANKANEEA 100
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.95
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 871 PXNPXSXXPPRPPEXPPXPXPTHXGXPXXRXAHSPP 978
P P + PP PP P P P P R PP
Sbjct: 264 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 861 PPXPXEPTXXTPPPPXGXTPXTXPHPXRXTXTTXRPQP 974
PP P P +PPPP +P P P T P P
Sbjct: 280 PPPP--PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.95
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 871 PXNPXSXXPPRPPEXPPXPXPTHXGXPXXRXAHSPP 978
P P + PP PP P P P P R PP
Sbjct: 285 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 861 PPXPXEPTXXTPPPPXGXTPXTXPHPXRXTXTTXRPQP 974
PP P P +PPPP +P P P T P P
Sbjct: 301 PPPP--PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.95
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 871 PXNPXSXXPPRPPEXPPXPXPTHXGXPXXRXAHSPP 978
P P + PP PP P P P P R PP
Sbjct: 270 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 861 PPXPXEPTXXTPPPPXGXTPXTXPHPXRXTXTTXRPQP 974
PP P P +PPPP +P P P T P P
Sbjct: 286 PPPP--PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 861 PPXPXEPTXXTPPPPXGXTPXTXPHPXRXTXTTXRP 968
PP P P PPPP P PH + RP
Sbjct: 132 PPPPPPPPHYPPPPPHYPPPPPAPHSAYIDHSAPRP 167
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +3
Query: 861 PPXPXEPTXXTP-PPPXGXTPXTXPHPXRXTXTTXRPQP 974
PP P P TP PPP TP P P + P P
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPP 299
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +1
Query: 862 PQXPXNPXSXXPPRPPEXPPXPXPTHXGXPXXRXAHSPP 978
P P + PP P PP P P+ G P PP
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 337
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 862 PQXPXNPXSXXPPRPPEXPPXPXPTHXGXPXXRXAHSP 975
P P P PP PP PP P P P A +P
Sbjct: 57 PPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAP 94
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 861 PPXPXEPTXXTPPPPXGXTPXTXPHPXRXTXTTXRPQP 974
PP P P PPPP P P P + P P
Sbjct: 57 PPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAP 94
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +3
Query: 861 PPXPXEPTXXTP-PPPXGXTPXTXPHPXRXTXTTXRPQP 974
PP P P TP PPP TP P P + P P
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPP 309
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +1
Query: 862 PQXPXNPXSXXPPRPPEXPPXPXPTHXGXPXXRXAHSPP 978
P P + PP P PP P P+ G P PP
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 347
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 861 PPXPXEPTXXTPPPPXGXTPXTXPHPXRXTXTTXRPQP 974
PP P PT P P P P P PQP
Sbjct: 97 PPPPPPPTQPEPEPEPRPEPQPEPQPEPQPEPQPEPQP 134
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 871 PXNPXSXXPPRPPEXPPXPXPTHXGXPXXRXAHSPP 978
P +P + P P+ PP P P+ P + +PP
Sbjct: 625 PVDPVTEASPLNPQPPPPPSPSPEPEPEPKPPVTPP 660
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.130 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,489,340
Number of Sequences: 27780
Number of extensions: 168168
Number of successful extensions: 1250
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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