Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N09
         (883 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002959-1|AAH02959.1|  518|Homo sapiens APEX nuclease (apurinic...    33   1.4  
AY884244-1|AAW56941.1|  518|Homo sapiens APEX nuclease (apurinic...    33   1.4  
AL020991-3|CAI43126.1|  518|Homo sapiens APEX nuclease (apurinic...    33   1.4  
AJ011311-1|CAB45242.1|  518|Homo sapiens AP endonuclease XTH2, p...    33   1.4  
AF119046-1|AAD43041.1|  518|Homo sapiens APE2 protein protein.         33   1.4  
AB049211-1|BAB13764.1|  518|Homo sapiens apurinic/apyrimidinic e...    33   1.4  
AB021260-1|BAA78422.1|  518|Homo sapiens APEX nuclease-like 2 pr...    33   1.4  

>BC002959-1|AAH02959.1|  518|Homo sapiens APEX nuclease
           (apurinic/apyrimidinic endonuclease) 2 protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 236 GLMSEFTKSEWKKV-SEGGAMXTCHKLYTWVNHTVLMLLFQIF 361
           G M EFT+ E + + SEG A+ T HK+ TW      + L  ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156


>AY884244-1|AAW56941.1|  518|Homo sapiens APEX nuclease
           (apurinic/apyrimidinic endonuclease) 2 protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 236 GLMSEFTKSEWKKV-SEGGAMXTCHKLYTWVNHTVLMLLFQIF 361
           G M EFT+ E + + SEG A+ T HK+ TW      + L  ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156


>AL020991-3|CAI43126.1|  518|Homo sapiens APEX nuclease
           (apurinic/apyrimidinic endonuclease) 2 protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 236 GLMSEFTKSEWKKV-SEGGAMXTCHKLYTWVNHTVLMLLFQIF 361
           G M EFT+ E + + SEG A+ T HK+ TW      + L  ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156


>AJ011311-1|CAB45242.1|  518|Homo sapiens AP endonuclease XTH2,
           putative protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 236 GLMSEFTKSEWKKV-SEGGAMXTCHKLYTWVNHTVLMLLFQIF 361
           G M EFT+ E + + SEG A+ T HK+ TW      + L  ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156


>AF119046-1|AAD43041.1|  518|Homo sapiens APE2 protein protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 236 GLMSEFTKSEWKKV-SEGGAMXTCHKLYTWVNHTVLMLLFQIF 361
           G M EFT+ E + + SEG A+ T HK+ TW      + L  ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156


>AB049211-1|BAB13764.1|  518|Homo sapiens apurinic/apyrimidinic
           endonuclease 2 protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 236 GLMSEFTKSEWKKV-SEGGAMXTCHKLYTWVNHTVLMLLFQIF 361
           G M EFT+ E + + SEG A+ T HK+ TW      + L  ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156


>AB021260-1|BAA78422.1|  518|Homo sapiens APEX nuclease-like 2
           protein protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 236 GLMSEFTKSEWKKV-SEGGAMXTCHKLYTWVNHTVLMLLFQIF 361
           G M EFT+ E + + SEG A+ T HK+ TW      + L  ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,263,476
Number of Sequences: 237096
Number of extensions: 2042588
Number of successful extensions: 3703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3703
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)