Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_N08
(946 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 52 9e-08
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 30 0.41
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 29 0.95
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 28 1.7
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 3.8
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 5.1
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 26 8.9
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 26 8.9
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 8.9
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 52.4 bits (120), Expect = 9e-08
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Frame = +3
Query: 204 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEED--------VKEAVNALRKL 359
K LLLDIEGT SISFVKDKLFPYA + +++ ++ ++ +EA+ LRKL
Sbjct: 3 KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRELGKTPEEALINLRKL 62
Query: 360 AIE-DQEKSVERTGYHSWR 413
E +E+S + W+
Sbjct: 63 HAEGSKERSFKMVQGRIWK 81
Score = 31.9 bits (69), Expect = 0.14
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 485 KVAPLKQLQGLIWKKGYDKGRHQGTRVRRCAPGS*TNGVQLXGQKIYIYSLWNPSXPKKX 664
K K +QG IWKKGY+ P +QL G ++YIYS + S P +
Sbjct: 68 KERSFKMVQGRIWKKGYESNELTSHLFPDVVPAI-QRSLQL-GMRVYIYS--SGSVPAQK 123
Query: 665 LF 670
L+
Sbjct: 124 LY 125
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 270 PYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSV 386
PY+ E VK+ L + EEDV +AL L+ QE S+
Sbjct: 355 PYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSL 393
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 29.1 bits (62), Expect = 0.95
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = -2
Query: 549 CLPLS*PFFQISPWSCFR-G----ATLRSDDIWXF-DILNQTLDLILFRSI-LSRNGNQS 391
CL LS PFF CF G +R D W F +IL+ L L+LF + R G
Sbjct: 83 CLALSDPFFWAPKHRCFTIGFFLLVLVRMTDYWIFINILHNAL-LVLFPHVDTERRGLYR 141
Query: 390 FQHS 379
F+H+
Sbjct: 142 FRHT 145
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +3
Query: 198 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQE 377
+ ++ L +E T TSI + +FPY + F W +D + L L + ++
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQDEIRKIKKLPVLFLSGEK 241
Query: 378 KSV 386
+
Sbjct: 242 DEI 244
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -1
Query: 259 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 104
++ +I + P + SK +F+ ITVF S DP+ + N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 279 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVERT 395
EEN + L A DEEDV+ A A ++ A+E E S T
Sbjct: 1180 EENWEVALAAAEDEEDVQAAQVARKESALEQTEFSETST 1218
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = +1
Query: 28 YRESLRFLAEFNQCFFAEKRVSSSQINFEIHKSSSGRAGV--DLSKWQKRIL*SAILLRK 201
YR +RF F C RV+ + H S R G+ L+ W ++ R+
Sbjct: 49 YRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARR 108
Query: 202 A 204
A
Sbjct: 109 A 109
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = +1
Query: 28 YRESLRFLAEFNQCFFAEKRVSSSQINFEIHKSSSGRAGV--DLSKWQKRIL*SAILLRK 201
YR +RF F C RV+ + H S R G+ L+ W ++ R+
Sbjct: 49 YRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARR 108
Query: 202 A 204
A
Sbjct: 109 A 109
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 8.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 276 AEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSV--ERTGYHSWRGCF*RGSNRGSG 449
A EN DF+ W+ ++ +++V+ + E +KS E G+ RG F +N S
Sbjct: 149 AVENNSDFIKFDWNSDEDEDSVSNDKSKNNESLKKSSKNEIPGFMRQRGRFFHEANEKS- 207
Query: 450 *ECQMXRCRQTVKL 491
+ R RQ +L
Sbjct: 208 -DSNRKRKRQAYEL 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,042
Number of Sequences: 5004
Number of extensions: 63555
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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