Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N08
         (946 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   5.8  
U50472-1|AAA93475.1|  141|Anopheles gambiae protein ( Anopheles ...    24   7.7  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    24   7.7  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 458  SNXQMSSDRKVAPLKQLQGLIWKKG 532
            S+ Q+    K  PLK++ G++ +KG
Sbjct: 1113 SSDQLMGGGKPGPLKEVNGVVTRKG 1137


>U50472-1|AAA93475.1|  141|Anopheles gambiae protein ( Anopheles
           gambiae putativefatty acid binding protein mRNA, partial
           cds. ).
          Length = 141

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 489 TLRSDDIWXFDILNQTLDLILFRSILSRNGNQSF--QHSSPDPR*QASS 349
           T RS   W  +   +T+D  + +S+ + +GN+    Q     PR  ASS
Sbjct: 89  TRRSSSSWAMEFDEETVDGRMVKSVCTFDGNKLIHEQKGEKRPRSCASS 137


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 300 LDAQWDEEDVKEAVNALRKLAIEDQEKSVERTGYHSWRG 416
           +DA+       EA+NA   L      +S+E+T +  W G
Sbjct: 194 IDAKLGYRFWAEAINAAVYLQNISSSRSIEKTPFELWYG 232


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,922
Number of Sequences: 2352
Number of extensions: 16144
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 103362750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)