Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N08
         (946 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75954-7|CAB00106.2|  492|Caenorhabditis elegans Hypothetical pr...    79   5e-15
AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF039046-1|AAB94210.1|  458|Caenorhabditis elegans F-box a prote...    29   4.8  
U88167-1|AAB42226.1|  319|Caenorhabditis elegans Hypothetical pr...    29   6.4  

>Z75954-7|CAB00106.2|  492|Caenorhabditis elegans Hypothetical
           protein F58H1.3a protein.
          Length = 492

 Score = 79.0 bits (186), Expect = 5e-15
 Identities = 50/127 (39%), Positives = 67/127 (52%)
 Frame = +3

Query: 210 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVE 389
           LLLDIEGT TSISFVKD+LFPYA ENV ++L+  +D    +  V  LR +A +  E  V 
Sbjct: 11  LLLDIEGTITSISFVKDELFPYAFENVGNYLEEHYDNPATQIIVEDLRHIADQQAENDVA 70

Query: 390 RTGYHSWRGCF*RGSNRGSG*ECQMXRCRQTVKLPP*SNSRGLSGKKVMIRGDIRGHVYD 569
                  R        +           ++  KL P    +GL  ++   RGD++GHVY 
Sbjct: 71  VVRIREPRKECIEDVTKN-----VRHWIKRDKKLTPMKALQGLIWEEAYQRGDVKGHVYP 125

Query: 570 DVLPALE 590
           DVLP L+
Sbjct: 126 DVLPVLK 132



 Score = 36.3 bits (80), Expect = 0.032
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +2

Query: 479 DRKVAPLKQLQGLIWKKGYDKGRHQG 556
           D+K+ P+K LQGLIW++ Y +G  +G
Sbjct: 96  DKKLTPMKALQGLIWEEAYQRGDVKG 121


>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 183 GDIVKKSKV--LLLDIEGTTTSISFVKDKLFPYAEENVKDFLD 305
           G I++KSK+  L+  I  TT     VKD L  YA++ V   +D
Sbjct: 226 GSIMEKSKLDDLMQQISSTTVLEENVKDVLVEYADDFVSSLID 268


>AF039046-1|AAB94210.1|  458|Caenorhabditis elegans F-box a protein
           protein 195 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 282 ENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVE 389
           +NVK  LD  W EE++  AV A  +   ED+E+  E
Sbjct: 377 KNVKVHLDDDWHEEELVGAVGAEEEEDEEDEEEEDE 412


>U88167-1|AAB42226.1|  319|Caenorhabditis elegans Hypothetical
           protein D2092.6 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 329 QRSSERFEEACYRGSGEEC*KDWLPFLERMLLKRIKSRVWLRMSNXQMSSDRKVAPL 499
           +R   R     YR  GEE         ER  + R+  + W+R +   +   RK+ P+
Sbjct: 69  ERDYSRLRPLAYRKRGEEFPMRRSKSYERPNVTRLPEKKWIRNTRSLVDKSRKINPI 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,457,839
Number of Sequences: 27780
Number of extensions: 365609
Number of successful extensions: 974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)