Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N05
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       31   1.3  
04_01_0624 - 8202783-8203140,8203242-8203594,8203697-8203872,820...    28   7.2  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/79 (30%), Positives = 26/79 (32%)
 Frame = +3

Query: 354 PNXTVLTPNPAXXIQFPWVV*GSIQXPDYPXGPIXPFNQMIPFALXP*GXPPKXXGXPLX 533
           P    LTP P   + FP      +  P  P  P  PF    P    P   PP      L 
Sbjct: 227 PPIPFLTPPPPPFLPFPLPPIPFLTPPS-PPPPAFPF----PLPPWPWAPPPAFPFPHLP 281

Query: 534 VFFXXPXGPPIPXXVFXXP 590
             F  P  PP P   F  P
Sbjct: 282 PIFSPPSPPPPPPPAFPFP 300


>04_01_0624 -
           8202783-8203140,8203242-8203594,8203697-8203872,
           8203993-8204230,8208308-8208748
          Length = 521

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 306 IVFTXDTSQIGXW*QXPNXTVL-TPNPAXXI-QFPW 407
           +VF  DT   G W + P  T L TP P      FPW
Sbjct: 30  VVFEADTGLGGVWARTPECTALQTPRPMYQYSDFPW 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,380,993
Number of Sequences: 37544
Number of extensions: 305065
Number of successful extensions: 438
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)