Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N04
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   5.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   5.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +2

Query: 590 PALLDTAKVFYIARXPRDVAVSLYFADKLFGYFSDXVTFKEFWDLFKXISSSHAYXSHVK 769
           P +L + K  Y+       +++L  A +LFGY    +   +F DL   + S +   + V+
Sbjct: 177 PLILGSCKCIYVQ------SINLCMAGRLFGYLCPGMALSQF-DL---MGSPYRNLTFVR 226

Query: 770 KXGXNVXIQI 799
           + G    +Q+
Sbjct: 227 REGEFSVLQV 236


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +2

Query: 263 YQDHAEDIYNLEIRPDDIWVIPFSRSGTTWLQELVWLVNNNLDYAAAASQPLNKRYAYIE 442
           YQ  + D      + DD     FS S  TWL+     VN N      A++  +K   +  
Sbjct: 408 YQTMSRDPARTPFQWDDSVSAGFSSSSNTWLR-----VNENYKTVNLAAEKKDKNSFF-- 460

Query: 443 HVTQKSDAAKKMP 481
           ++ +K  + KK P
Sbjct: 461 NMFKKFASLKKSP 473


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 365 VWLVNNNLDYAAAASQPL 418
           +WL+ + LD+   AS PL
Sbjct: 679 IWLLGSRLDWEDHASSPL 696


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 160 TCDGGRGFNSEEILQRVQPAVCPR 231
           +C+G +GF    I Q++Q   C +
Sbjct: 83  SCEGCKGFFRRSIQQKIQYRPCTK 106


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +2

Query: 263 YQDHAEDIYNLEIRPDDIWVIPFSRSGTTWLQELVWLVNNNLDYAAAASQPLNKRYAYIE 442
           YQ  + D      + DD     FS S  TWL+     VN N      A++  +K   +  
Sbjct: 408 YQTMSRDPARTPFQWDDSVSAGFSSSSNTWLR-----VNENYKTVNLAAEKKDKNSFF-- 460

Query: 443 HVTQKSDAAKKMP 481
           ++ +K  + KK P
Sbjct: 461 NMFKKFASLKKSP 473


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 306 GLISKLYISSAWSWYPGVARYPGA 235
           G +++LY+ S   W P +  Y  A
Sbjct: 90  GGVTELYVPSEHIWLPDIVLYNNA 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,603
Number of Sequences: 438
Number of extensions: 5088
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)