Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N02
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   1.2  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      28   2.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 27/98 (27%), Positives = 29/98 (29%)
 Frame = +1

Query: 526 P*APPPLTSITKIDAXVXGGETRXDYKDTRRFPPGKXPRAPPCSDPAAYRDTCPPFXPSG 705
           P APPP        A    G            PP   P APP   P+A     PP  P G
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA-----PPSLPMG 442

Query: 706 KRGXFPHXPPLXXXXXXXXXXXXXLGLXXXNPPVXPDP 819
                P  PPL             +      PP  P P
Sbjct: 443 A----PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -2

Query: 737 RGGX*GKXPRXPEGXKGGQVSR*AAGSEQGGARGXFPGGKR 615
           RGG  G       G  GG       G  +GG+RG F GG R
Sbjct: 147 RGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSR 187



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -2

Query: 713 PRXPEGXKGGQVSR*AAG---SEQGGARGXFPGGKR 615
           P+ P+G + G   R   G     +GG+RG F G  R
Sbjct: 124 PKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSR 159


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +1

Query: 535 PPPLTSITKIDAXVXGGETRXDYKDTRRFPPGKXPRAPPCSDPAAYRDTCPPF 693
           PP LTS   +D+     +    +   R  PP   P  P  S  + Y+    PF
Sbjct: 120 PPSLTSDWIVDSYASDQDNPSVHTHNRTTPPIPPPHLPNASGSSVYQPPYTPF 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,269
Number of Sequences: 5004
Number of extensions: 52244
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)