Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_N02
(924 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 33 0.32
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 30 2.3
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.3
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 3.9
02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373... 29 3.9
04_03_0380 - 15150814-15152304 29 5.2
04_03_0348 + 14735581-14737071 29 5.2
03_02_0992 + 13049871-13050449 29 5.2
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 29 6.9
09_02_0543 + 10427321-10428315,10428440-10429154 29 6.9
06_01_0500 + 3584743-3585516 29 6.9
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 6.9
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.1
07_01_0479 + 3606663-3607448 28 9.1
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 9.1
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 33.1 bits (72), Expect = 0.32
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -2
Query: 734 GGX*GKXPRXPEGXKGGQVSR*AAGSEQGGARGXFPGG 621
GG G R P G +GG + R G GG G PGG
Sbjct: 151 GGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGG 188
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 710 RXPEGXKGGQVSR*AAGSEQGGARGXFPGGKRLV 609
R G +GG+ R G GG RG GG ++V
Sbjct: 39 RGGRGGRGGRTPRGRGGGRGGGGRGGMKGGSKVV 72
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 622 PPGKXPRAPPCSDPAAYRDTCPPFXPSGKRGXFPHXPP 735
PP K P PP P PP P GK+G P PP
Sbjct: 348 PPAKGPPPPP---PPKGPSPPPPPPPGGKKGGPPPPPP 382
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 601 YKDTRRFPPGKXPRAPPCSDPAAYRDTCPPFXPSGKRGXFPHXPP 735
Y+DTR +PP + R D + +RD + G RG PH P
Sbjct: 238 YRDTRDYPPYRDTR-----DYSPHRDARDYYDGRGGRGYSPHRSP 277
>02_04_0350 +
22234632-22235145,22235277-22236209,22237253-22237340,
22237859-22237865
Length = 513
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 698 GXKGGQVSR*AAGSEQGGARGXFPGGKRLVSL 603
G KG ++ R AA ++ GAR PGG+ LV+L
Sbjct: 441 GEKGKEMRRRAAEWKELGARATQPGGRSLVNL 472
>04_03_0380 - 15150814-15152304
Length = 496
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 701 EGXKGGQVSR*AAGSEQGGARGXFPGG 621
EG KG ++ R AAG ++ AR PGG
Sbjct: 444 EGEKGAEMRRRAAGWKEAAARAARPGG 470
>04_03_0348 + 14735581-14737071
Length = 496
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 701 EGXKGGQVSR*AAGSEQGGARGXFPGG 621
EG KG ++ R AAG ++ AR PGG
Sbjct: 444 EGEKGAEMRRRAAGWKEAAARAARPGG 470
>03_02_0992 + 13049871-13050449
Length = 192
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/59 (23%), Positives = 22/59 (37%)
Frame = +1
Query: 535 PPPLTSITKIDAXVXGGETRXDYKDTRRFPPGKXPRAPPCSDPAAYRDTCPPFXPSGKR 711
PPP + + + G ++ R PP R + P + T P P+G R
Sbjct: 59 PPPSPLLALAGSRIGRGGVLPPHRHRRSVPPPSLGRGVASTSPPLHAATVTPLRPAGSR 117
>11_01_0428 +
3279662-3279784,3281676-3281756,3281845-3281933,
3282011-3282085,3282211-3282269,3282316-3282414,
3282762-3283013,3283050-3283180
Length = 302
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 724 EEXXHAXPKGRKADRYPGKRQGRNRGXHEGAFQGGNAWYLY 602
EE + +GR R+ G+ +GR RG + G + G Y Y
Sbjct: 192 EEGDYYNYRGRGRGRFRGRGRGRGRGGYYGGGRRGGYGYDY 232
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 28.7 bits (61), Expect = 6.9
Identities = 23/82 (28%), Positives = 26/82 (31%)
Frame = +1
Query: 487 GQEP*KGRVAGVFP*APPPLTSITKIDAXVXGGETRXDYKDTRRFPPGKXPRAPPCSDPA 666
G EP + P P P T A G D PP P++ P PA
Sbjct: 2 GTEPDPIQQDSPAPPRPTPAPQATPPPAIPESGPPPPPAPDMPPPPPTPAPQSSPAPPPA 61
Query: 667 AYRDTCPPFXPSGKRGXFPHXP 732
D PP P PH P
Sbjct: 62 P--DMTPPPGPGPAAAPSPHSP 81
>06_01_0500 + 3584743-3585516
Length = 257
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/69 (28%), Positives = 27/69 (39%)
Frame = +3
Query: 483 KRPGTVKRPRCWRFSIGSAPPDEHHKNRRSXXRWRNPTGL*RYQAFPPWKAPSCXPLFRP 662
K+PG+ K P I S PPD H + R + R P + +P+ P
Sbjct: 5 KKPGSKKMPTPAVMRIRSPPPDPHRRARAAPRRCIPPLA---SDSESSASSPTTSPAAAA 61
Query: 663 CRLPGYLSA 689
LPG A
Sbjct: 62 AALPGIAQA 70
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +1
Query: 610 TRRFPPGKXPRAPPCSDPAAYRDTCPP-FXPSGKRGXFPHXPP 735
T PP + P PP PAA PP P+ H P
Sbjct: 150 TPSMPPAERPALPPTKAPAAISPATPPQLSPANAHSTHHHAKP 192
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 294 NESAN---ARGEAVCVLGALPLPRSLTRCAR 377
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 9.1
Identities = 30/107 (28%), Positives = 34/107 (31%), Gaps = 4/107 (3%)
Frame = +1
Query: 526 P*APPPL--TSITKIDAXVXGGETRXDYKDTRRFP-PGKXPRAPPCSDPAAYRDTCPPFX 696
P PPP SI D E + + R+ P P APP P PP
Sbjct: 501 PTTPPPCGSLSILSTDENQLPPEVQHESPSDRKLPSPSPTAAAPPPPPP-------PPPP 553
Query: 697 PSGKRGXF-PHXPPLXXXXXXXXXXXXXLGLXXXNPPVXPDPXXLYP 834
PSG + F P PP PP P P L P
Sbjct: 554 PSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVP 600
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 622 PPGKXPRAPPCSDPAAYRDTCPPFXPSGKRGXFPHXP 732
PPG R PP P R P P G R P P
Sbjct: 204 PPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPP 240
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +3
Query: 366 RCARSFGCGERYQLTQRR*YGYPQNQGITQEKTCEQKXSKRPGTVKRPRCWRFSIGSAPP 545
R +RS R+ ++ R +++ T+ + + S+ PG +R GSA P
Sbjct: 606 RYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRSRSPGASRRHERSATGSGSALP 665
Query: 546 DEHHKNRR 569
D H R+
Sbjct: 666 DSGHGERK 673
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,536,206
Number of Sequences: 37544
Number of extensions: 456448
Number of successful extensions: 1336
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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