Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_N02
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    38   0.013
U88183-3|AAB52656.2|  593|Caenorhabditis elegans Warthog (hedgeh...    29   6.2  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   6.2  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   6.2  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical...    28   8.2  

>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
 Frame = -2

Query: 890 PXGXXFXXYRGWXXXXXXPG*RXXGSGLTGGFXXXKPXLXRT-DLTRXWETYRGGX*GKX 714
           P G     +RG          R  G G  GG     P   R  D  R    +RGG  G+ 
Sbjct: 6   PRGRGGGGFRGGRGGGSGFTPRGGGGGFRGGDRGRSPGGFRGGDRGRSSSGFRGGDRGRS 65

Query: 713 PRXPEGXK-GGQVSR*AAGSEQGGARGXFPGGKR 615
           P    G + GG   R   G  +GG RG F GG R
Sbjct: 66  PGGFRGDREGGFSPRGRGGGFRGGDRGGFRGGDR 99


>U88183-3|AAB52656.2|  593|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 6 protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 606 RYQAFPPWKAPSCXPLFRPCRLPGYLSAFLP 698
           +Y A+P  + P+  P ++P   P Y  A+ P
Sbjct: 338 QYNAYPAMQQPAYQPAYQPAYQPAYQPAYQP 368


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
 Frame = +1

Query: 616 RFPPGKXPRAPPCSDPAAYRDTCPPFX--PSGKRGXFPHXPP 735
           R PP   P  PP      Y    PPF   P   RG FP  PP
Sbjct: 268 RGPPPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPP 309


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
 Frame = +1

Query: 616 RFPPGKXPRAPPCSDPAAYRDTCPPFX--PSGKRGXFPHXPP 735
           R PP   P  PP      Y    PPF   P   RG FP  PP
Sbjct: 268 RGPPPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPP 309


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 625 PGKXPRAPPCSDPAAYRDTCPPFXPSGKRG 714
           PG  PR  PC   +A  + CP   P G RG
Sbjct: 355 PGTRPRGNPCDQCSAQPNHCPS-GPPGPRG 383


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +1

Query: 622 PPGKXPRAPPCSDPAAYRDTCPPFXPSGKRGXFPHXPP 735
           PP + PR PP   P   R   PP  P   +   P  PP
Sbjct: 142 PPPRVPRTPPPRSPPPRR---PPMTPPSPQRRPPRTPP 176


>AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.17 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 528 WKNASNAAFLRFLAFCXPFAHMF 460
           WKN  N  F  +   C PF H+F
Sbjct: 212 WKNTKNFCFDNYELECPPFEHLF 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,844,866
Number of Sequences: 27780
Number of extensions: 340195
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)