Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_N01
(945 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024136-2|AAF35960.2| 105|Caenorhabditis elegans Hypothetical ... 34 0.17
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 25 1.1
Z81015-5|CAB02661.1| 342|Caenorhabditis elegans Hypothetical pr... 29 3.7
U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin fam... 29 3.7
U88182-4|AAB42307.1| 113|Caenorhabditis elegans Hypothetical pr... 29 4.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.5
>AC024136-2|AAF35960.2| 105|Caenorhabditis elegans Hypothetical
protein F54A3.5 protein.
Length = 105
Score = 33.9 bits (74), Expect = 0.17
Identities = 15/62 (24%), Positives = 21/62 (33%)
Frame = +2
Query: 227 NNTTDDYSAKIDMCLTDGIVKTXXXXXXXXXXXXXFLKRRRWPXXXXXXXXXXXXXXNCE 406
+ + D+ KID C D ++K F K R WP NC
Sbjct: 11 SRSEDEVGQKIDRCFADSLLKVTGGVAIGIVASVAFFKSRSWPIWFGSGVGLGTGWSNCR 70
Query: 407 HE 412
H+
Sbjct: 71 HD 72
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 25.0 bits (52), Expect(2) = 1.1
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -2
Query: 944 PXPGXXXXXXXXPPPPPPP 888
P P PPPPPPP
Sbjct: 72 PPPPLISILQQAPPPPPPP 90
Score = 24.6 bits (51), Expect(2) = 1.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 908 PPPPPPPXXXK 876
PPPPPPP K
Sbjct: 86 PPPPPPPPTLK 96
>Z81015-5|CAB02661.1| 342|Caenorhabditis elegans Hypothetical
protein C11E4.7 protein.
Length = 342
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 580 LHNLIITKTTK*NDSLNDCIFKTMGVSDDSCTIPSFIH 467
LH L I K SLN T +S SC +PSF H
Sbjct: 55 LHTLDINKLMSSISSLNTATKITPHISSSSCFLPSFSH 92
>U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin family
protein 18 protein.
Length = 473
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = -3
Query: 571 LIITKTTK*NDSLNDCIFKTMGVSDDSCTIPSFIHCFFLVLTY*ILCSICLI*FMFTVCI 392
L+I K K + N IF+ + D +FI F +LCS+CL+ F+F V
Sbjct: 34 LVILKNDKLIEFYNIGIFQWLRDQDSVYLYSNFIVSFL------VLCSVCLLIFVFDVAT 87
Query: 391 SDTDAYTH 368
S H
Sbjct: 88 SQESEAFH 95
>U88182-4|AAB42307.1| 113|Caenorhabditis elegans Hypothetical
protein C53C11.2 protein.
Length = 113
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -3
Query: 583 LLHNLIITKTTK*NDSLNDCIFKTMGVSDDSCTIPSFIHCFFLVLTY*ILCSICL 419
LL +++ KTT+ N+S +D + + MG++ C I + I +L IL +C+
Sbjct: 2 LLDEMLLPKTTQQNESCDDPMVQFMGINMGICLILTAIVAIAAILGC-ILLLLCV 55
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 944 PXPGXXXXXXXXPPPPPPP 888
P PG PPPPPPP
Sbjct: 730 PPPGGLPPITGGPPPPPPP 748
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 944 PXPGXXXXXXXXPPPPPPP 888
P PG PPPPPPP
Sbjct: 746 PPPGGLPPISGGPPPPPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 944 PXPGXXXXXXXXPPPPPPP 888
P PG PPPPPPP
Sbjct: 730 PPPGGLPPITGGPPPPPPP 748
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 944 PXPGXXXXXXXXPPPPPPP 888
P PG PPPPPPP
Sbjct: 746 PPPGGLPPISGGPPPPPPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 944 PXPGXXXXXXXXPPPPPPP 888
P PG PPPPPPP
Sbjct: 313 PPPGGLPPITGGPPPPPPP 331
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 944 PXPGXXXXXXXXPPPPPPP 888
P PG PPPPPPP
Sbjct: 329 PPPGGLPPISGGPPPPPPP 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,998,035
Number of Sequences: 27780
Number of extensions: 331639
Number of successful extensions: 2975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1831
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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