Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M24
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 96 7e-21
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 96 7e-21
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 64 2e-11
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 48 2e-06
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 36 0.008
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.025
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.032
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.032
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.032
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 30 0.40
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 2.1
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 2.8
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 6.5
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 6.5
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 95.9 bits (228), Expect = 7e-21
Identities = 51/93 (54%), Positives = 62/93 (66%)
Frame = +1
Query: 127 MVNSRVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTP 306
MV +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ AK +
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARF-MDT 59
Query: 307 RKDXQNRCITIKSTAISMFFELEXKDLXFIPXP 405
R D Q R +TIKSTAIS+F E+ D+ + P
Sbjct: 60 RADEQERGVTIKSTAISLFAEMTDDDMKDMKEP 92
Score = 39.9 bits (89), Expect = 5e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVTAA 494
FL+NLIDSPG VDF SEVTAA
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAA 118
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 95.9 bits (228), Expect = 7e-21
Identities = 51/93 (54%), Positives = 62/93 (66%)
Frame = +1
Query: 127 MVNSRVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTP 306
MV +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ AK +
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARF-MDT 59
Query: 307 RKDXQNRCITIKSTAISMFFELEXKDLXFIPXP 405
R D Q R +TIKSTAIS+F E+ D+ + P
Sbjct: 60 RADEQERGVTIKSTAISLFAEMTDDDMKDMKEP 92
Score = 39.9 bits (89), Expect = 5e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVTAA 494
FL+NLIDSPG VDF SEVTAA
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAA 118
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 64.5 bits (150), Expect = 2e-11
Identities = 33/76 (43%), Positives = 52/76 (68%)
Frame = +1
Query: 145 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQN 324
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ +K L R+D
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIIS-SKLAGTVRFLDFREDEIT 65
Query: 325 RCITIKSTAISMFFEL 372
R IT+KS+AIS+FF++
Sbjct: 66 RGITMKSSAISLFFKV 81
Score = 36.3 bits (80), Expect = 0.006
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVTAA 494
+LINLIDSPG VDF SEV++A
Sbjct: 94 YLINLIDSPGHVDFSSEVSSA 114
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = +1
Query: 151 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQNRC 330
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I R + L + + R
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQ--FLDKLEVERRRG 105
Query: 331 ITIKSTAISMFF 366
IT+K+ SM +
Sbjct: 106 ITVKAQTCSMIY 117
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVTAAPGSLMDPXGCXL 530
+L+NLID+PG VDF +EV SL GC L
Sbjct: 124 YLLNLIDTPGHVDFRAEVM---HSLAACEGCIL 153
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 35.9 bits (79), Expect = 0.008
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 178 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG-AKXRXKPVSLTPRKDXQNRCITIKSTAI 354
+IRN+ +IAH+D GK+TLT+ ++ G + + + R ITI S AI
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 355 SMFFELEXKDLXFIP 399
S + + +L P
Sbjct: 87 SFTWRNQRINLIDTP 101
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 438 INLIDSPGPVDFXSEV 485
INLID+PG DF EV
Sbjct: 95 INLIDTPGHADFTFEV 110
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.025
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 133 NSRVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 264
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 438 INLIDSPGPVDFXSEVTAA 494
IN+ID+PG +DF EV A
Sbjct: 147 INIIDTPGHIDFTIEVERA 165
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.3 bits (65), Expect = 0.40
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 169 KKRNIRNMSVIAHVDHGKSTLTDSL 243
KK ++ N+ I HVDHGK+TLT ++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAI 73
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVTAAPGSLMD 512
F ID+PG VDF EV AAP ++ D
Sbjct: 209 FAFQCIDTPGHVDFVDEV-AAPMAISD 234
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 190 MSVIAHVDHGKSTLTDSL-VSKAGIIAGAKXRXKPVSLTPRKDXQNRCITIKSTAISMFF 366
++++ HVDHGK+TL D+ S K + T D ++ IT T M F
Sbjct: 174 VTLMGHVDHGKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAF 233
Query: 367 ELEXK 381
E K
Sbjct: 234 EAMRK 238
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 187 NMSVIAHVDHGKSTLTDSLVSKAGII 264
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 178 SASCPSSHGSRLPVNSPF*MVYDFCSIK 95
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,000
Number of Sequences: 5004
Number of extensions: 47986
Number of successful extensions: 100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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