Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M24
(918 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 136 2e-32
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 136 2e-32
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 55 6e-08
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 55 6e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 44 2e-04
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 41 0.001
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.041
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.041
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.041
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 33 0.29
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 33 0.29
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.38
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.38
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.38
AL117199-3|CAB55043.3| 868|Caenorhabditis elegans Hypothetical ... 33 0.38
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 31 1.2
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 31 1.2
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 2.0
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 2.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.0
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 29 3.5
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 4.7
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 4.7
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 8.1
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 136 bits (330), Expect = 2e-32
Identities = 71/97 (73%), Positives = 78/97 (80%)
Frame = +1
Query: 127 MVNSRVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTP 306
MVN VDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG+K + T
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDT- 59
Query: 307 RKDXQNRCITIKSTAISMFFELEXKDLXFIPXPDQRE 417
RKD Q RCITIKSTAIS+FFELE KDL F+ +Q E
Sbjct: 60 RKDEQERCITIKSTAISLFFELEKKDLEFVKGENQFE 96
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVTAA 494
FLINLIDSPG VDF SEVTAA
Sbjct: 110 FLINLIDSPGHVDFSSEVTAA 130
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 136 bits (330), Expect = 2e-32
Identities = 71/97 (73%), Positives = 78/97 (80%)
Frame = +1
Query: 127 MVNSRVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTP 306
MVN VDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG+K + T
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDT- 59
Query: 307 RKDXQNRCITIKSTAISMFFELEXKDLXFIPXPDQRE 417
RKD Q RCITIKSTAIS+FFELE KDL F+ +Q E
Sbjct: 60 RKDEQERCITIKSTAISLFFELEKKDLEFVKGENQFE 96
Score = 41.5 bits (93), Expect = 8e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVTAAPG 500
FLINLIDSPG VDF SEVTAA G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALG 132
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 55.2 bits (127), Expect = 6e-08
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +1
Query: 178 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQNRCITIKSTAIS 357
+IRN+ ++AHVDHGK++ DSLVS A + ++ K + R+D Q R IT+KS+ IS
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVS-ANAVISSRMAGKLRYMDSREDEQTRGITMKSSGIS 77
Query: 358 MFFE 369
+ E
Sbjct: 78 LLCE 81
Score = 35.1 bits (77), Expect = 0.071
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3
Query: 435 LINLIDSPGPVDFXSEVTAA 494
LINLIDSPG VDF EVT+A
Sbjct: 84 LINLIDSPGHVDFSGEVTSA 103
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 55.2 bits (127), Expect = 6e-08
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +1
Query: 178 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQNRCITIKSTAIS 357
+IRN+ ++AHVDHGK++ DSLVS A + ++ K + R+D Q R IT+KS+ IS
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVS-ANAVISSRMAGKLRYMDSREDEQTRGITMKSSGIS 77
Query: 358 MFFE 369
+ E
Sbjct: 78 LLCE 81
Score = 35.1 bits (77), Expect = 0.071
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3
Query: 435 LINLIDSPGPVDFXSEVTAA 494
LINLIDSPG VDF EVT+A
Sbjct: 84 LINLIDSPGHVDFSGEVTSA 103
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 181 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQ-NRCITIKSTAIS 357
+RN+ VIAHVD GK+T+T+ L+ AG I A K ++T D + R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 358 M 360
+
Sbjct: 85 L 85
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 181 IRNMSVIAHVDHGKSTLTDSLVSKAGII 264
IRN ++AHVDHGKSTL D L+ G +
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAV 69
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVT 488
+L+NLID+PG VDF +EV+
Sbjct: 102 YLLNLIDTPGHVDFSAEVS 120
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 35.9 bits (79), Expect = 0.041
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +1
Query: 187 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQNRCITIKS 345
N+ I HVDHGK+TLT ++ GAK R K + + + R ITI +
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYR-KYEDIDNAPEEKARGITINA 102
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.041
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +1
Query: 187 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQNRCITIKS 345
N+ I HVDHGK+TLT ++ GAK R K + + + R ITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYR-KYEDIDNAPEEKARGITINA 103
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.041
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +1
Query: 187 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQNRCITIKS 345
N+ I HVDHGK+TLT ++ GAK R K + + + R ITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYR-KYEDIDNAPEEKARGITINA 103
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 187 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQNRCITI 339
N+ I H+DHGK+TLT S +++ G K + K+ + R ITI
Sbjct: 47 NVGTIGHIDHGKTTLT-SAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 187 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKXRXKPVSLTPRKDXQNRCITI 339
N+ I H+DHGK+TLT S +++ G K + K+ + R ITI
Sbjct: 47 NVGTIGHIDHGKTTLT-SAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 32.7 bits (71), Expect = 0.38
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 181 IRNMSVIAHVDHGKSTLTDSLVSKAGII 264
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>AL117199-3|CAB55043.3| 868|Caenorhabditis elegans Hypothetical
protein Y43F11A.5 protein.
Length = 868
Score = 32.7 bits (71), Expect = 0.38
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 126 NGEFTGRRDPWDDGQEAEYPQHVCDRPRRSRXVNPHGLVGFQGRYHCWCEXPXKT 290
NG+FT + DDG++AEY + + + + P H +CE P KT
Sbjct: 347 NGDFTLKGSHDDDGKQAEYQKFLNSKKEKPSPRAPSSSPPAALLNHSYCENPPKT 401
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 725 GGPXGGXGXFXPTXGPXXVXGXGPXGXGXPP 817
GGP G G P GP G GP G PP
Sbjct: 616 GGPGGPGGGGGPPRGPGGGGGGGPTGPPAPP 646
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 725 GGPXGGXGXFXPTXGPXXVXGXGPXGXGXPP 817
GGP G G P GP G GP G PP
Sbjct: 616 GGPGGPGGGGGPPRGPGGGGGGGPTGPPAPP 646
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 160 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 252
+MD +RN+++ H+ HGK+T D L+ +
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQ 155
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVTAA 494
+L+N+ID+PG V+F E+TA+
Sbjct: 201 YLLNIIDTPGHVNFSDEMTAS 221
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 432 FLINLIDSPGPVDFXSEVTAA 494
+L+N+ID+PG V+F E+TA+
Sbjct: 76 YLLNIIDTPGHVNFSDEMTAS 96
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 252
MD +RN+++ H+ HGK+T D L+ +
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQ 30
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 759 PPXXPXGXXAXXPXGXGFPPPKXXPXMXXWXXXXXPXXXFKXGXXGXXFSPPP 917
PP P A P G G PPP+ P M + P F+ G +PPP
Sbjct: 709 PPGIPGYPPAPPPPGVGPPPPQGIPPM-GFDPNKPPPPMFQQGFNAG--APPP 758
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 166 DKKRNIRNMSVIAHVDHGKSTLTDSL 243
D +R ++++ HVDHGK+TL D++
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM 176
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 214 DRRGRSQTCCGYSASCPSSHG 152
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 214 DRRGRSQTCCGYSASCPSSHG 152
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +2
Query: 707 PXXXKNGGPXGGX-GXFXPTXGPXXVXGXGPXGXGXPPPKKXPXNVFXXXXKXP 865
P P GG G F P+ P GP G PP P F P
Sbjct: 154 PFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPP 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,911,274
Number of Sequences: 27780
Number of extensions: 331364
Number of successful extensions: 867
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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