Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M24
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    33   0.005
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    33   0.005
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.045
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.42 

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 163 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 258
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.045
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 190 MSVIAHVDHGKSTLTDSL 243
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 121 SKMVNSRVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSL 243
           SK+  S++  +   +  ++   N+  I HV HGKST+  ++
Sbjct: 22  SKLDVSKLTALSREVISRQATINIGTIGHVAHGKSTIVKAI 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,117
Number of Sequences: 438
Number of extensions: 5003
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)