Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M23
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    59   8e-10
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   8.6  

>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
 Frame = +3

Query: 246 VQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEFEK------VKLDXXXXXXXXXXXXX 407
           V YC  C++P+EYCE+     KCK+WL+ + P  ++K      +  D             
Sbjct: 12  VLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHPDVYDKLYGEQDLSKDLENTLNVSGTKDS 71

Query: 408 XXXXXXXMLKSKKK----EDVPKL---VQVSRAPRGKKKSVTVVSGLSTFDIDLKVAEKF 566
                   L  ++K    E+  ++   V +    R K+K VT V GL  F I+ K A K 
Sbjct: 72  NAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQGLDAFGIETKKAAKM 131

Query: 567 XGTKFACG 590
              KFA G
Sbjct: 132 LANKFATG 139



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +1

Query: 610 DEIVIQGDVKDDLFDIIPEKWPXIDEDSIEDLGDQK 717
           DEIV+QGD+  D+FD I EK+  + ED+I+ + D K
Sbjct: 150 DEIVVQGDLNYDIFDFILEKFKEVPEDNIKIVEDTK 185


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 547 RSISKVLNPDTTVTDFFLPRGARDTCTNLGTSSFFLDFN 431
           RS  +V+NP+ +VTD   P G  +     G SSF    N
Sbjct: 223 RSRKRVVNPECSVTD--TPYGKLNNVIGEGASSFIRVIN 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,434
Number of Sequences: 5004
Number of extensions: 54178
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)