Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M23
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513...    57   2e-08
10_08_0373 - 17286104-17288839                                         33   0.42 
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    31   1.7  
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142...    31   1.7  
07_01_0914 - 7693305-7693513,7693613-7694111,7694716-7696316,769...    28   9.0  

>01_01_0671 -
           5137787-5137843,5138420-5138503,5138595-5138662,
           5138854-5138935,5139282-5139346,5139504-5139747
          Length = 199

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +3

Query: 237 PIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLP 341
           P++V YCG C +P EYCE+ P++++CK WL  N P
Sbjct: 8   PVRVLYCGVCGLPAEYCEFGPDFERCKPWLRANAP 42



 Score = 40.7 bits (91), Expect = 0.002
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = +3

Query: 444 KKEDVPKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAEKFXGTKFACG 590
           KK+D  ++V + +  R K+K VTVV GL  F + L  A K  G KFA G
Sbjct: 101 KKKDKQEVV-IEKIVRNKRKCVTVVKGLELFGVKLSDASKKLGKKFATG 148



 Score = 31.9 bits (69), Expect = 0.73
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 610 DEIVIQGDVKDDLFDIIPEKWPXIDEDSIEDLGDQKR 720
           ++I +QGD+  D+ + I + WP + E +I  + D ++
Sbjct: 159 EQIDVQGDISYDIVEFITDTWPDVPESAIFFIEDGRK 195


>10_08_0373 - 17286104-17288839
          Length = 911

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
 Frame = -2

Query: 552 LLDQYQKCSIQTRL*LISSCPEEHEIPALIWEHLLSSWILTYPCHHASGVFFL-----LH 388
           L+D Y KC       L+  C +E +I    W  ++S+++L         +F       + 
Sbjct: 583 LIDMYGKCGKIEDARLVFECTDEKDIAT--WNAIMSAYLLHRIPGEVKKLFKYIEQSGIQ 640

Query: 387 PRYFLFRLILLSRTLSEDSSPAIVYIYRILDNIHNILWAWNSFHSIEPLLGM*PLLEDPL 208
           P    F +ILLS    E S       +  +++++ I      +  +  ++GM  LLE+ L
Sbjct: 641 PDPVTF-IILLSACKQEGSMEEARRYFYSMEDVYGIQPTLKHYTCMVDIMGMAGLLEESL 699

Query: 207 IDLYQPLQL 181
            +L Q +QL
Sbjct: 700 -ELIQKMQL 707


>11_06_0180 +
           20962420-20962528,20962618-20962699,20962831-20962948,
           20963024-20963062,20963181-20963343,20963706-20963921,
           20964039-20964116,20964244-20964500,20964544-20964575,
           20964815-20965197,20965262-20965831,20966250-20966343,
           20966365-20966541,20966761-20966963,20968244-20968301,
           20969126-20969381,20969553-20969789
          Length = 1023

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 282 YCEYYPEYDKCKQWLEKNLPTEFEKVKL 365
           + E  PEY++ K+WLE++LP    K K+
Sbjct: 740 WLEASPEYEQEKRWLEQDLPVSCGKFKI 767


>11_06_0155 -
           20712601-20713553,20713618-20714000,20714240-20714271,
           20714315-20714571,20714699-20714724,20714894-20715081,
           20715302-20715595,20715714-20715752,20715827-20715944,
           20716076-20716157,20716610-20716668,20717156-20717221,
           20717358-20717447,20718142-20718236
          Length = 893

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 282 YCEYYPEYDKCKQWLEKNLPTEFEKVKL 365
           + E  PEY++ K+WLE++LP    K K+
Sbjct: 839 WLEASPEYEQEKRWLEQDLPVSCGKFKI 866


>07_01_0914 -
           7693305-7693513,7693613-7694111,7694716-7696316,
           7696509-7696530
          Length = 776

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 483 HEIPALIWEH-LLSSWILTYPCHHASGVFFLLHPRYFLFRLILLSRTLSEDSSPAIVYIY 307
           H  P +++    +++W+ TY      G F  + P  F   + +   +       ++ ++Y
Sbjct: 358 HTYPLVVYRAAFIAAWLCTYCVPVEEGNF--IRPEVFTMAVEIAQGSRQAIGVTSMAFLY 415

Query: 306 RILDNIHN 283
           R LDN+++
Sbjct: 416 RALDNVYH 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,485
Number of Sequences: 37544
Number of extensions: 300122
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)