Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M23
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical...   105   3e-23
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    28   8.1  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    28   8.1  

>AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical
           protein Y47D3A.21 protein.
          Length = 192

 Score =  105 bits (253), Expect = 3e-23
 Identities = 59/141 (41%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
 Frame = +3

Query: 198 RDLSMGPREGVTYPIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEFEKVKL---- 365
           + L+ GP +GV+YP+K+ YCG CSMP EYC+Y  + D C+ W  +N P   E +++    
Sbjct: 10  QSLAPGPIDGVSYPLKMVYCGQCSMPPEYCDYSGQTDVCRAWATQNAPELLEGLEISDEP 69

Query: 366 ----DXXXXXXXXXXXXXXXXXXXXMLKS--KKKEDVPKLVQVSRAPRGKKKSVTVVSGL 527
               D                       S  KKK   P+ V + R PRG KKSVTV+ GL
Sbjct: 70  AADGDEKKKQKRGGKGSKTGAAAAQAAASGGKKKGGGPQKVTLQREPRG-KKSVTVIKGL 128

Query: 528 STFDIDLKVAEKFXGTKFACG 590
           +TFDIDLKVA K    KFACG
Sbjct: 129 ATFDIDLKVASKLFAQKFACG 149



 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 32/50 (64%), Positives = 38/50 (76%)
 Frame = +1

Query: 571 AQNLLVGSSXXGDDEIVIQGDVKDDLFDIIPEKWPXIDEDSIEDLGDQKR 720
           AQ    GSS  G DEIVIQGDVKDDL D+IPEKW  + ++ I+DLGD+KR
Sbjct: 143 AQKFACGSSVTGADEIVIQGDVKDDLLDLIPEKWKQVTDEQIDDLGDKKR 192


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 288 EYYPEYDKCKQWLEKNLPTEFEKVKLD 368
           E   E+ KCK+ +E+    +FEK+K D
Sbjct: 367 ELIEEFKKCKKGVEEEFEKKFEKIKED 393


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 288 EYYPEYDKCKQWLEKNLPTEFEKVKLD 368
           E   E+ KCK+ +E+    +FEK+K D
Sbjct: 367 ELIEEFKKCKKGVEEEFEKKFEKIKED 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,347,345
Number of Sequences: 27780
Number of extensions: 294004
Number of successful extensions: 722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)