Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M22
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 101 1e-21
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 100 2e-21
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 95 5e-20
02_04_0430 + 22834405-22834839 29 4.9
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915... 29 6.4
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 8.5
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 8.5
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 24 8.9
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 101 bits (241), Expect = 1e-21
Identities = 62/152 (40%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Frame = +3
Query: 183 HPLQNQWSLWFYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYA 350
HPL++ W+ WF DN + K TW ++ + TF TVEDFW LY++I PS+L G D+
Sbjct: 52 HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFH 110
Query: 351 VFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENSRI-X*XCGAV 527
FK I P WED GG+W S + + D WL +L +IGE CGAV
Sbjct: 111 CFKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQFDYGDEICGAV 166
Query: 528 VNVRPK--XINCYLDS*CNEXHATIEIGKKLK 617
V+VR K I + + NE A I IGK+ K
Sbjct: 167 VSVRGKQERIAIWTKNAANEA-AQISIGKQWK 197
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 100 bits (239), Expect = 2e-21
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Frame = +3
Query: 183 HPLQNQWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 353
HPL+ ++ LW+ R++++E+N+ ++ F TVE FW Y H+ P L D +
Sbjct: 49 HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHL 108
Query: 354 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGEN-SRIX*XCGAVV 530
FK+GIRP+WED AN+ GG+W+I +K T RFW D+VL+L+G+ CG V+
Sbjct: 109 FKEGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVCGVVL 164
Query: 531 NVR 539
+VR
Sbjct: 165 SVR 167
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 95.5 bits (227), Expect = 5e-20
Identities = 53/150 (35%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Frame = +3
Query: 183 HPLQNQWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 353
H L QW+ W+ + K W +L + TFDTVE+FW LY I PS++ D+ +
Sbjct: 30 HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHL 89
Query: 354 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGEN-SRIX*XCGAVV 530
FK G+ P WED GG+W + +K T L+ WL+ ++ LIGE CG V
Sbjct: 90 FKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQFDESEEICGVVA 146
Query: 531 NVRPKXINCYLDS*CNEXHAT-IEIGKKLK 617
+VR + L + A + IGKK K
Sbjct: 147 SVRQRGDKLALWTRTASNEAVQVNIGKKWK 176
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 430 FSRLISHLPPILLASSSHIGRM 365
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>09_02_0423 +
9153088-9153181,9153281-9153378,9153532-9153708,
9153827-9153927,9154334-9154490
Length = 208
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 153 AEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEE 248
AEV PE ++ HP +Q + Y D N +W E
Sbjct: 2 AEVKPEDMVHHPPMDQLQGFEYCIDSNPSWGE 33
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 304 IILSYRQ--NFAKVMTMQYSSKAFVLCGKTMLTRWEEDGLSVLRKNNALL 447
++LS+ Q A ++ M + + F L GKT + W + S ++KNN L
Sbjct: 351 VLLSHAQMVELANILDMYFEDQ-FTLPGKTFYSNWNSEP-SKIKKNNGYL 398
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 327 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 470
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +1
Query: 298 CTIILSYRQNFAKVMTMQYSSKAFVLC 378
CT++ +R++ +++T+Q+S C
Sbjct: 290 CTLVTRHRKHADEILTLQFSQPDGTYC 316
Score = 22.6 bits (46), Expect(2) = 8.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 364 AFVLCGKTMLTRWEEDGLSVLRKN 435
A L GK +T WE+D +RKN
Sbjct: 352 ALALNGKD-ITEWEDDTDEYMRKN 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,864,608
Number of Sequences: 37544
Number of extensions: 377266
Number of successful extensions: 750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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