Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M22
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 159 2e-39
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 156 2e-38
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 155 4e-38
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 121 8e-28
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 119 3e-27
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 116 2e-26
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 116 2e-26
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 116 2e-26
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 71 1e-12
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 71 1e-12
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 159 bits (387), Expect = 2e-39
Identities = 70/135 (51%), Positives = 96/135 (71%), Gaps = 2/135 (1%)
Frame = +3
Query: 147 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 326
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGG 79
Query: 327 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGE--NS 500
L G DY +FK+GI+PMWED N GGRWL+ ++K++R LD +WL++++ ++GE +
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDE 139
Query: 501 RIX*XCGAVVNVRPK 545
CGAVVNVR K
Sbjct: 140 YGDYICGAVVNVRQK 154
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 156 bits (378), Expect = 2e-38
Identities = 72/137 (52%), Positives = 97/137 (70%), Gaps = 4/137 (2%)
Frame = +3
Query: 147 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 326
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGG 79
Query: 327 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK-QRFTD-LDRFWLDVVLLLIGE-- 494
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQLQRRTQLLDHYWLELLMAIVGEQF 139
Query: 495 NSRIX*XCGAVVNVRPK 545
+ CGAVVNVR K
Sbjct: 140 DEYGDYICGAVVNVRQK 156
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 155 bits (376), Expect = 4e-38
Identities = 72/138 (52%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
Frame = +3
Query: 147 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 326
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGG 79
Query: 327 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK--QRFTD-LDRFWLDVVLLLIGE- 494
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHYWLELLMAIVGEQ 139
Query: 495 -NSRIX*XCGAVVNVRPK 545
+ CGAVVNVR K
Sbjct: 140 FDEYGDYICGAVVNVRQK 157
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 121 bits (291), Expect = 8e-28
Identities = 58/148 (39%), Positives = 87/148 (58%), Gaps = 3/148 (2%)
Frame = +3
Query: 183 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 362
+PL+ W+ W+ +++RNK+WE+ L ++ TF+TV +FW LY I+ PS L DY VF+
Sbjct: 12 YPLKRNWTWWYLNDERNKSWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRD 71
Query: 363 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGE--NSRIX*XCGAVVNV 536
I+PMWE N GGRWLI ++K + +D WL++++ L+GE + CG V NV
Sbjct: 72 DIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNV 131
Query: 537 RPKXINCYL-DS*CNEXHATIEIGKKLK 617
R K + CN+ + IG LK
Sbjct: 132 RGKGSKISVWTKDCNDDETNMRIGVVLK 159
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 119 bits (286), Expect = 3e-27
Identities = 56/128 (43%), Positives = 79/128 (61%), Gaps = 5/128 (3%)
Frame = +3
Query: 177 IKHP---LQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 347
I HP L+ W+ W+ +++RNK+WEE L + TF +V +FW L+ IK PS L DY
Sbjct: 12 ISHPVYKLKRNWTWWYLNDERNKSWEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDY 71
Query: 348 AVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGE--NSRIX*XCG 521
VF+ GI PMWE N+ GGRWLI++EK + +D W ++++ +IGE + I CG
Sbjct: 72 NVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCG 131
Query: 522 AVVNVRPK 545
V NVR K
Sbjct: 132 IVCNVRGK 139
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 116 bits (279), Expect = 2e-26
Identities = 61/149 (40%), Positives = 85/149 (57%), Gaps = 4/149 (2%)
Frame = +3
Query: 183 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 362
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 68
Query: 363 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGE--NSRIX*XCGAVVNV 536
I+P WE N GGRWLI + K + LD WL+++L LIGE + CG V NV
Sbjct: 69 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 128
Query: 537 RPK--XINCYLDS*CNEXHATIEIGKKLK 617
R + I+ + + CN+ + IG LK
Sbjct: 129 RGQGSKISVWTKN-CNDDDTNMRIGVVLK 156
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 116 bits (279), Expect = 2e-26
Identities = 61/149 (40%), Positives = 85/149 (57%), Gaps = 4/149 (2%)
Frame = +3
Query: 183 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 362
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+
Sbjct: 48 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 107
Query: 363 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGE--NSRIX*XCGAVVNV 536
I+P WE N GGRWLI + K + LD WL+++L LIGE + CG V NV
Sbjct: 108 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 167
Query: 537 RPK--XINCYLDS*CNEXHATIEIGKKLK 617
R + I+ + + CN+ + IG LK
Sbjct: 168 RGQGSKISVWTKN-CNDDDTNMRIGVVLK 195
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 116 bits (279), Expect = 2e-26
Identities = 61/149 (40%), Positives = 85/149 (57%), Gaps = 4/149 (2%)
Frame = +3
Query: 183 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 362
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 68
Query: 363 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGE--NSRIX*XCGAVVNV 536
I+P WE N GGRWLI + K + LD WL+++L LIGE + CG V NV
Sbjct: 69 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 128
Query: 537 RPK--XINCYLDS*CNEXHATIEIGKKLK 617
R + I+ + + CN+ + IG LK
Sbjct: 129 RGQGSKISVWTKN-CNDDDTNMRIGVVLK 156
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 276 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 455
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 456 RFWLDVVLLLIGENSRI-X*XCGAVVNVR 539
R W ++++ +IGE + CGAV ++R
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIR 150
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 276 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 455
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 456 RFWLDVVLLLIGENSRI-X*XCGAVVNVR 539
R W ++++ +IGE + CGAV ++R
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIR 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,896
Number of Sequences: 27780
Number of extensions: 329039
Number of successful extensions: 686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -